RchiOBHm_Chr3g0476291

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
22231810 .. 22237261
5452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1581 bp
ATGTGTTGTTTGCTCTTAACTTTGCGCGCAACCACCAACCACTTTCTCCCCACTCACTTCCTCGCCGCTCCACGACTCCTCACTTTTCGCTCTGCCATCTCAACTCTCGCCATGTCCAGCCGCTCCAACTTCCAGGGCGGCCGCAGCAGAGGCGGCCCTAACTCCCGCGGCGGCGCTCGCCGTGGAGGCCGAGGAGGAGGACGCGGCGGCGGCGGCGGCCGAGGCGGCGAACAGCGCTGGTGGGACCCCGTGTGGCGAGCCGAGCGACTGAGGCAACAAGCCGCGGAGATGGAAGTTCTTGATGCGAGTGAGTATTGGGGGAAGATGGAGCAGTTCAGAAGCGGAGCGGAGCAGGAGATGATAATAAGACGTAATTTTAGTCGGCATGATCAGCAAACCCTATATGAAATGGCCTATGAACTAGGGCTTCACTTCCATGCATATAATAAGGGGAAGGCTCTTGTGGTCAGCAAGGTTCCTCTGCCAGATTATCGGGCAGACCTTGATGATGTTCATGGTTCCACACAAAAAGAGATTCGGATGTCTACAGAGACTGCAGAGAGAGTCGGGAGTCTTTTGCAAAGCTCGCAGGGGCAGGGAAGTAAGCAAGCTTTTGGTAATGTTGCTTCAGTGGCGTCTGGGTCTGGCCAGGGGAACAAACTAACAACTGTTAGTGAAAATACAACCAAACCCAGCTCCAGCTTGGAACCTGATACTGTTAAGGAGAAAGAGAAACTTAGCCTTCAACTTAAGGACTTGCAGGAAAAAATGAAGGTAAGTAATAGTCTGAAAGCAATGCTGACGTTCCGAGAAAAGCTTCCTGCATTCAATGTGAAGTCTGAGTTCCTGAGAGCTGTTTCTGAAAATCAGGTGTTGGTAGTCTCGGGTGAGACAGGTTGTGGCAAAACAACACAACTTCCTCAGTTTATTCTAGAAGATGAGATTTCACGTCTGCATGGTGCTGAGTGCAACATAATATGCACTCAGCCTCGTCGTATATCTGCCATGTCTGTTGCTGCTCGTATATCCTCTGAAAGGGGAGAGAATCTTGGTGAAACTGTTGGTTATCAGATTCGACTGGAATCAAAGCGCTCTGCTCAAACAAGATTGCTATTTTGCACAACTGGAGTATTACTTCGTCAGTTGGTTCAAGACCCACAGTTAACTGGTGTGAGCCATTTGTTGGTTGATGAAATCCATGAAAGAGGCATGAACGAGGACTTTTTACTAATAATTTTGCGAGACCTTCTTCCTCGACGTCCAGATCTACGACTTATTCTAATGAGTGCTACCATCAATGCTGACTTGTTTTCCAAATACTTTGGAAATGCCCCAACAATACATATACCGGGATTAACGTTCCCTGTGGCAGAGCTATTTCTAGAAGACGTTTTGGAGAAAACTCATTATATAGTCGAGTCAGAGTCCGAGAAGATGGAGAGGGGAAATTCCAGGAGAAGGAGACAGCAAGACTCCAAGAAGGATCCCTTAACTGAACTATTTGAGGCAATCTTACTTTCCTATCATTCTAAGTTTCTTACCAAATCAATTTTAAAACTTGCATGCAAAATTATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

526

Amino Acids

58.85

Weight (kDa)

9.3

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 280 - 434 4.9e-10 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1261
AccB7I CCANNNNNTGG 1 cut(s) 1183
AccBSI CCGCTC 3 cut(s) 68, 123, 347
AccI GTMKAC 1 cut(s) 545
AccII CGCG 4 cut(s) 27, 168, 204, 284
AclI AACGTT 1 cut(s) 1358
AclWI GGATC 2 cut(s) 1478, 1491
AcoI YGGCCR 3 cut(s) 139, 217, 646
AcsI RAATTY 1 cut(s) 1447
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 2 cut(s) 635, 1258
AfeI AGCGCT 2 cut(s) 236, 1091
AfiI CCNNNNNNNGG 3 cut(s) 1035, 1183, 1458
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 3 cut(s) 746, 829, 1151
AjiI CACGTC 1 cut(s) 950
AjnI CCWGG 3 cut(s) 132, 648, 1451
AluBI AGCT 7 cut(s) 585, 611, 696, 702, 817, 854, 1375
AluI AGCT 7 cut(s) 585, 611, 696, 702, 817, 854, 1375
Alw26I GTCTC 5 cut(s) 545, 884, 886, 1236, 1456
AlwI GGATC 2 cut(s) 1478, 1491
AlwNI CAGNNNCTG 1 cut(s) 554
Ama87I CYCGRG 1 cut(s) 883
Aor51HI AGCGCT 2 cut(s) 236, 1091
AoxI GGCC 6 cut(s) 139, 154, 187, 217, 411, 646
ApeKI GCWGC 2 cut(s) 144, 1016
ApoI RAATTY 1 cut(s) 1447
Asp700I GAANNNNTTC 1 cut(s) 816
AspLEI GCGC 5 cut(s) 27, 29, 176, 237, 1092
AspS9I GGNCC 2 cut(s) 155, 244
AsuC2I CCSGG 1 cut(s) 1350
AsuHPI GGTGA 2 cut(s) 899, 1064
AvaI CYCGRG 1 cut(s) 883
AvaII GGWCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 648
BamHI GGATCC 1 cut(s) 1483
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BbsI GAAGAC 1 cut(s) 1392
BbvI GCAGC 2 cut(s) 156, 1003
BccI CCATC 5 cut(s) 104, 283, 319, 1301, 1429
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 3 cut(s) 134, 650, 1453
BclI TGATCA 1 cut(s) 388
BcnI CCSGG 1 cut(s) 1350
BcoDI GTCTC 5 cut(s) 545, 884, 886, 1236, 1456
BfaI CTAG 3 cut(s) 422, 932, 1382
BfmI CTRYAG 2 cut(s) 546, 555
BfoI RGCGCY 3 cut(s) 177, 238, 1093
BfrI CTTAAG 1 cut(s) 749
BglI GCCNNNNNGGC 2 cut(s) 186, 225
BglII AGATCT 1 cut(s) 1264
Bme1390I CCNGG 4 cut(s) 134, 650, 1350, 1453
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 883
BmgBI CACGTC 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 155, 244
BmiI GGNNCC 6 cut(s) 245, 246, 477, 520, 708, 1485
BmrFI CCNGG 4 cut(s) 134, 650, 1350, 1453
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 1392
BpmI CTGGAG 2 cut(s) 682, 1146
BpuMI CCSGG 1 cut(s) 1350
BsaHI GRCGYC 2 cut(s) 635, 1258
BsaI GGTCTC 1 cut(s) 1236
BsaJI CCNNGG 7 cut(s) 133, 166, 181, 190, 220, 282, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 1035, 1183, 1458
Bse1I ACTGG 3 cut(s) 1083, 1129, 1171
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 3 cut(s) 134, 650, 1453
BseDI CCNNGG 7 cut(s) 133, 166, 181, 190, 220, 282, 649
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 1035, 1183, 1458
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 6 cut(s) 260, 831, 839, 935, 954, 998
BseNI ACTGG 3 cut(s) 1083, 1129, 1171
BsePI GCGCGC 1 cut(s) 25
BseRI GAGGAG 3 cut(s) 68, 207, 210
BseX3I CGGCCG 2 cut(s) 139, 217
BseXI GCAGC 2 cut(s) 156, 1003
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 4 cut(s) 27, 168, 204, 284
Bsh1285I CGRYCG 2 cut(s) 142, 220
BshFI GGCC 6 cut(s) 141, 156, 189, 219, 413, 648
BsiEI CGRYCG 2 cut(s) 142, 220
BsiHKCI CYCGRG 1 cut(s) 883
BsiSI CCGG 1 cut(s) 1349
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 3 cut(s) 1035, 1183, 1458
BsmAI GTCTC 5 cut(s) 545, 884, 886, 1236, 1456
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 6 cut(s) 141, 156, 189, 219, 413, 648
Bso31I GGTCTC 1 cut(s) 1236
BsoBI CYCGRG 1 cut(s) 883
Bsp143I GATC 3 cut(s) 388, 1264, 1483
BspANI GGCC 6 cut(s) 141, 156, 189, 219, 413, 648
BspCNI CTCAG 6 cut(s) 261, 832, 840, 934, 955, 997
BspFNI CGCG 4 cut(s) 27, 168, 204, 284
BspLI GGNNCC 6 cut(s) 245, 246, 477, 520, 708, 1485
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 2 cut(s) 1478, 1491
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 1236
BsrBI CCGCTC 3 cut(s) 68, 123, 347
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 3 cut(s) 1083, 1129, 1171
BssECI CCNNGG 7 cut(s) 133, 166, 181, 190, 220, 282, 649
BssHII GCGCGC 1 cut(s) 25
BssMI GATC 3 cut(s) 388, 1264, 1483
BssNI GRCGYC 2 cut(s) 635, 1258
Bst2UI CCWGG 3 cut(s) 134, 650, 1453
Bst4CI ACNGT 4 cut(s) 670, 718, 1060, 1161
BstACI GRCGYC 2 cut(s) 635, 1258
BstAFI CTTAAG 1 cut(s) 749
BstC8I GCNNGC 6 cut(s) 27, 178, 258, 587, 609, 1564
BstDEI CTNAG 8 cut(s) 269, 737, 840, 848, 921, 963, 984, 1530
BstDSI CCRYGG 3 cut(s) 166, 181, 282
BstENI CCTNNNNNAGG 1 cut(s) 1033
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 4 cut(s) 27, 168, 204, 284
BstH2I RGCGCY 3 cut(s) 177, 238, 1093
BstHHI GCGC 5 cut(s) 27, 29, 176, 237, 1092
BstKTI GATC 3 cut(s) 391, 1267, 1486
BstMAI GTCTC 5 cut(s) 545, 884, 886, 1236, 1456
BstMBI GATC 3 cut(s) 388, 1264, 1483
BstMCI CGRYCG 2 cut(s) 142, 220
BstNI CCWGG 3 cut(s) 134, 650, 1453
BstNSI RCATGY 1 cut(s) 1566
BstSCI CCNGG 4 cut(s) 132, 648, 1348, 1451
BstSFI CTRYAG 2 cut(s) 546, 555
BstUI CGCG 4 cut(s) 27, 168, 204, 284
BstV1I GCAGC 2 cut(s) 156, 1003
BstV2I GAAGAC 1 cut(s) 1392
BstX2I RGATCY 2 cut(s) 1264, 1483
BstYI RGATCY 2 cut(s) 1264, 1483
BstZI CGGCCG 2 cut(s) 139, 217
BsuRI GGCC 6 cut(s) 141, 156, 189, 219, 413, 648
BtgI CCRYGG 3 cut(s) 166, 181, 282
BtrI CACGTC 1 cut(s) 950
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 6 cut(s) 27, 178, 258, 587, 609, 1564
CaiI CAGNNNCTG 1 cut(s) 554
CciNI GCGGCCGC 1 cut(s) 139
CfoI GCGC 5 cut(s) 27, 29, 176, 237, 1092
Cfr13I GGNCC 2 cut(s) 155, 244
Cfr42I CCGCGG 2 cut(s) 169, 285
CseI GACGC 2 cut(s) 210, 624
CviAII CATG 9 cut(s) 112, 386, 437, 515, 956, 1006, 1199, 1210, 1563
DdeI CTNAG 8 cut(s) 269, 737, 840, 848, 921, 963, 984, 1530
DpnI GATC 3 cut(s) 390, 1266, 1485
DpnII GATC 3 cut(s) 388, 1264, 1483
DraI TTTAAA 1 cut(s) 1554
EaeI YGGCCR 3 cut(s) 139, 217, 646
EagI CGGCCG 2 cut(s) 139, 217
EclXI CGGCCG 2 cut(s) 139, 217
Eco31I GGTCTC 1 cut(s) 1236
Eco47I GGWCC 1 cut(s) 244
Eco47III AGCGCT 2 cut(s) 236, 1091
Eco52I CGGCCG 2 cut(s) 139, 217
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 883
EcoNI CCTNNNNNAGG 1 cut(s) 1033
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 132, 648, 1451
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 9 cut(s) 115, 389, 440, 518, 959, 1009, 1202, 1213, 1566
FalI AAGNNNNNCTT 4 cut(s) 720, 752, 1472, 1504
FaqI GGGAC 1 cut(s) 257
FatI CATG 9 cut(s) 111, 385, 436, 514, 955, 1005, 1198, 1209, 1562
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 388
FblI GTMKAC 1 cut(s) 545
FokI GGATG 1 cut(s) 553
FspBI CTAG 3 cut(s) 422, 932, 1382
GlaI GCGC 5 cut(s) 26, 28, 175, 236, 1091
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 2 cut(s) 682, 1146
HaeII RGCGCY 3 cut(s) 177, 238, 1093
HaeIII GGCC 6 cut(s) 141, 156, 189, 219, 413, 648
HapII CCGG 1 cut(s) 1349
HgaI GACGC 2 cut(s) 210, 624
HhaI GCGC 5 cut(s) 27, 29, 176, 237, 1092
Hin1I GRCGYC 2 cut(s) 635, 1258
Hin1II CATG 9 cut(s) 115, 389, 440, 518, 959, 1009, 1202, 1213, 1566
Hin6I GCGC 5 cut(s) 25, 27, 174, 235, 1090
HinP1I GCGC 5 cut(s) 25, 27, 174, 235, 1090
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 2 cut(s) 609, 815
HpaI GTTAAC 1 cut(s) 1164
HpaII CCGG 1 cut(s) 1349
HphI GGTGA 2 cut(s) 899, 1064
Hpy166II GTNNAC 2 cut(s) 546, 1164
Hpy188III TCNNGA 7 cut(s) 299, 568, 847, 932, 1151, 1262, 1382
Hpy8I GTNNAC 2 cut(s) 546, 1164
Hpy99I CGWCG 2 cut(s) 996, 1260
HpyAV CCTTC 6 cut(s) 448, 752, 766, 1256, 1452, 1474
HpyCH4III ACNGT 4 cut(s) 670, 718, 1060, 1161
HpyCH4IV ACGT 6 cut(s) 370, 803, 949, 1258, 1358, 1389
HpyF3I CTNAG 8 cut(s) 269, 737, 840, 848, 921, 963, 984, 1530
HpySE526I ACGT 6 cut(s) 370, 803, 949, 1258, 1358, 1389
Hsp92I GRCGYC 2 cut(s) 635, 1258
Hsp92II CATG 9 cut(s) 115, 389, 440, 518, 959, 1009, 1202, 1213, 1566
HspAI GCGC 5 cut(s) 25, 27, 174, 235, 1090
KflI GGGWCCC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 388
KspAI GTTAAC 1 cut(s) 1164
KspI CCGCGG 2 cut(s) 169, 285
Kzo9I GATC 3 cut(s) 388, 1264, 1483
LmnI GCTCC 6 cut(s) 73, 128, 328, 344, 349, 701
Lsp1109I GCAGC 2 cut(s) 156, 1003
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 422, 932, 1382
MaeII ACGT 6 cut(s) 370, 803, 949, 1258, 1358, 1389
MalI GATC 3 cut(s) 390, 1266, 1485
MbiI CCGCTC 3 cut(s) 68, 123, 347
MboI GATC 3 cut(s) 388, 1264, 1483
MboII GAAGA 5 cut(s) 334, 947, 1241, 1397, 1444
MflI RGATCY 2 cut(s) 1264, 1483
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 5 cut(s) 373, 1233, 1447, 1548, 1569
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 6 cut(s) 69, 573, 580, 1427, 1433, 1466
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 816
MscI TGGCCA 1 cut(s) 648
MseI TTAA 7 cut(s) 17, 720, 750, 1163, 1355, 1490, 1553
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 168, 284
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 1 cut(s) 1349
MspR9I CCNGG 4 cut(s) 134, 650, 1350, 1453
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 3 cut(s) 134, 650, 1453
MvnI CGCG 4 cut(s) 27, 168, 204, 284
NciI CCSGG 1 cut(s) 1350
NdeII GATC 3 cut(s) 388, 1264, 1483
NlaIII CATG 9 cut(s) 115, 389, 440, 518, 959, 1009, 1202, 1213, 1566
NlaIV GGNNCC 6 cut(s) 245, 246, 477, 520, 708, 1485
NmeAIII GCCGAG 3 cut(s) 215, 245, 286
NotI GCGGCCGC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 1566
PaeI GCATGC 1 cut(s) 1566
PauI GCGCGC 1 cut(s) 25
PctI GAATGC 1 cut(s) 824
PdmI GAANNNNTTC 1 cut(s) 816
PfeI GAWTC 4 cut(s) 535, 1045, 1072, 1082
PflMI CCANNNNNTGG 1 cut(s) 1183
PfoI TCCNGGA 1 cut(s) 1451
PleI GAGTC 6 cut(s) 69, 572, 579, 1426, 1432, 1466
PpsI GAGTC 6 cut(s) 69, 572, 579, 1426, 1432, 1466
PpuMI RGGWCCY 1 cut(s) 244
Psp1406I AACGTT 1 cut(s) 1358
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 132, 648, 1451
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 3 cut(s) 132, 648, 1451
PspN4I GGNNCC 6 cut(s) 245, 246, 477, 520, 708, 1485
PspPI GGNCC 2 cut(s) 155, 244
PspPPI RGGWCCY 1 cut(s) 244
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 2 cut(s) 1264, 1483
PteI GCGCGC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 435
SacII CCGCGG 2 cut(s) 169, 285
SaqAI TTAA 7 cut(s) 17, 720, 750, 1163, 1355, 1490, 1553
Sau3AI GATC 3 cut(s) 388, 1264, 1483
Sau96I GGNCC 2 cut(s) 155, 244
SchI GAGTC 6 cut(s) 69, 573, 580, 1427, 1433, 1466
ScrFI CCNGG 4 cut(s) 134, 650, 1350, 1453
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 546, 555
Sfr303I CCGCGG 2 cut(s) 169, 285
SgrBI CCGCGG 2 cut(s) 169, 285
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
SphI GCATGC 1 cut(s) 1566
Sse9I AATT 5 cut(s) 373, 1233, 1447, 1548, 1569
SspMI CTAG 3 cut(s) 422, 932, 1382
StyD4I CCNGG 4 cut(s) 132, 648, 1348, 1451
TaaI ACNGT 4 cut(s) 670, 718, 1060, 1161
TaiI ACGT 6 cut(s) 373, 806, 952, 1261, 1361, 1392
TaqI TCGA 3 cut(s) 1075, 1255, 1416
TasI AATT 5 cut(s) 373, 1233, 1447, 1548, 1569
TfiI GAWTC 4 cut(s) 535, 1045, 1072, 1082
Tru1I TTAA 7 cut(s) 17, 720, 750, 1163, 1355, 1490, 1553
Tru9I TTAA 7 cut(s) 17, 720, 750, 1163, 1355, 1490, 1553
TscAI CASTG 1 cut(s) 636
TseI GCWGC 2 cut(s) 144, 1016
TspDTI ATGAA 7 cut(s) 420, 432, 503, 785, 1206, 1215, 1226
TspRI CASTG 1 cut(s) 636
Van91I CCANNNNNTGG 1 cut(s) 1183
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 1033
XapI RAATTY 1 cut(s) 1447
XbaI TCTAGA 2 cut(s) 931, 1381
XceI RCATGY 1 cut(s) 1566
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 816
XspI CTAG 3 cut(s) 422, 932, 1382
ZraI GACGTC 1 cut(s) 1259
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.