RchiOBHm_Chr3g0477101

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
22952514 .. 22953988
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGTATGTGCAGAATTTGCTTGGCTTGTTTACTTTGATGATAACTCTTCCATCTGTATTTTCATGTGCGACGGTTGAAGGTTTGTTAGGTTTATTCACTGCAAAAGATTTCCATTCACTGTCTAAGAAAAGTTTCCTCATCCTTTTTGTCTTTCTTGACCTTGTTTCATTACAGTCCTTAGAGAATATGTTGCTGTTTCAATACCTAGTTAACTCTCTTGAAGTAGGTTTTCAACCTCGCAACTGTATCTATGCAGGTAAATTCATTTTAAATTTTATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

6.52

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AcsI RAATTY 3 cut(s) 13, 260, 271
AgsI TTSAA 4 cut(s) 77, 200, 221, 233
ApoI RAATTY 3 cut(s) 13, 260, 271
Asp700I GAANNNNTTC 1 cut(s) 131
BccI CCATC 1 cut(s) 58
BfaI CTAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 245
BseGI GGATG 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 73, 120, 174, 245
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 123, 178
BstF5I GGATG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 116
BveI ACCTGC 1 cut(s) 245
CviAII CATG 1 cut(s) 63
CviJI RGCY 1 cut(s) 24
CviKI_1 RGCY 1 cut(s) 24
DdeI CTNAG 2 cut(s) 123, 178
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 6, 64, 188, 252
FatI CATG 1 cut(s) 62
FokI GGATG 1 cut(s) 125
FspBI CTAG 1 cut(s) 206
Hin1II CATG 1 cut(s) 66
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HpaI GTTAAC 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 30, 211
Hpy188III TCNNGA 2 cut(s) 155, 218
Hpy8I GTNNAC 2 cut(s) 30, 211
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 4 cut(s) 73, 120, 174, 245
HpyCH4V TGCA 3 cut(s) 10, 101, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 123, 178
Hsp92II CATG 1 cut(s) 66
KspAI GTTAAC 1 cut(s) 211
LpnPI CCDG 1 cut(s) 240
MaeI CTAG 1 cut(s) 206
MboII GAAGA 1 cut(s) 38
MluCI AATT 3 cut(s) 13, 260, 271
MnlI CCTC 2 cut(s) 146, 246
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 3 cut(s) 210, 269, 283
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 210, 269, 283
SetI ASST 7 cut(s) 82, 91, 162, 207, 229, 238, 259
SgeI CNNG 9 cut(s) 32, 37, 75, 167, 173, 218, 230, 249, 267
Sse9I AATT 3 cut(s) 13, 260, 271
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 4 cut(s) 73, 120, 174, 245
TasI AATT 3 cut(s) 13, 260, 271
Tru1I TTAA 3 cut(s) 210, 269, 283
Tru9I TTAA 3 cut(s) 210, 269, 283
TscAI CASTG 2 cut(s) 103, 123
TspDTI ATGAA 3 cut(s) 51, 156, 253
TspRI CASTG 2 cut(s) 103, 123
XapI RAATTY 3 cut(s) 13, 260, 271
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.