RchiOBHm_Chr3g0477551

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
23465101 .. 23465585
485 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGAAAATTCTTACTGTTTACTTAATCATGGCCAATCTTCTTGTTCTCAACACTGCTTTTTACTCTAGTACGTGCCCCCATGTAATGCGGATCATATATTCTTTTGTTTCTAAAGCCGTGCAAGCAGAGGCAAACATGAGAGCATCTCTTAAACAGTTAATTTATATACACGGATGTGATGCATTGGTGTTGCTGAATGAGACCGAACAATTTCGATCTGAGAAGAGTGCACTGCCGAATGTAGATTCTCTAAAAGGGTTTAAGGTGATAGATGCCATCAAGTATTACCTGGAGATTCTCTGTCCAGGCGCAGCTGCTATAATATATAAGATATATTATATTTTACACACACACAATTATATATATATATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

8.72

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 33 - 103 3e-08 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 70
AjnI CCWGG 2 cut(s) 288, 304
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 1 cut(s) 98
AoxI GGCC 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 311, 314
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 277
BaeGI GKGCMC 2 cut(s) 77, 232
BalI TGGCCA 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 301, 323
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 290, 306
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
Bme1390I CCNGG 2 cut(s) 290, 306
BmrFI CCNGG 2 cut(s) 290, 306
BmsI GCATC 3 cut(s) 152, 169, 262
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 194
BseBI CCWGG 2 cut(s) 290, 306
BseGI GGATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 77, 232
BseXI GCAGC 2 cut(s) 301, 323
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 77, 232
Bsp143I GATC 2 cut(s) 90, 215
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 194
BssMI GATC 2 cut(s) 90, 215
Bst2UI CCWGG 2 cut(s) 290, 306
Bst4CI ACNGT 2 cut(s) 16, 156
Bst6I CTCTTC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 2 cut(s) 93, 218
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 90, 215
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 2 cut(s) 290, 306
BstSCI CCNGG 2 cut(s) 288, 304
BstSLI GKGCMC 2 cut(s) 77, 232
BstV1I GCAGC 2 cut(s) 301, 323
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 2 cut(s) 51, 230
BtsIMutI CAGTG 2 cut(s) 51, 230
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 69
CviAII CATG 3 cut(s) 28, 80, 136
CviJI RGCY 3 cut(s) 32, 116, 314
CviKI_1 RGCY 3 cut(s) 32, 116, 314
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 92, 217
DpnII GATC 2 cut(s) 90, 215
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 288, 304
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 3 cut(s) 31, 83, 139
FatI CATG 3 cut(s) 27, 79, 135
Fnu4HI GCNGC 2 cut(s) 312, 315
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 312, 315
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 312, 315
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 31, 83, 139
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 2 cut(s) 245, 295
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 19, 230
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 19, 230
HpyCH4III ACNGT 2 cut(s) 16, 156
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 121, 182, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 3 cut(s) 31, 83, 139
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 90, 215
LpnPI CCDG 4 cut(s) 275, 291, 302, 318
Lsp1109I GCAGC 2 cut(s) 301, 323
LweI GCATC 3 cut(s) 152, 169, 262
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 71
MalI GATC 2 cut(s) 92, 217
MboI GATC 2 cut(s) 90, 215
MboII GAAGA 2 cut(s) 29, 235
MhlI GDGCHC 2 cut(s) 77, 232
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 4 cut(s) 6, 159, 209, 355
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 210
MscI TGGCCA 1 cut(s) 32
MseI TTAA 4 cut(s) 23, 150, 158, 261
MslI CAYNNNNRTG 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 290, 306
MvaI CCWGG 2 cut(s) 290, 306
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 2 cut(s) 90, 215
NlaIII CATG 3 cut(s) 31, 83, 139
NsiI ATGCAT 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 245, 295
PkrI GCNGC 2 cut(s) 313, 316
Ppu21I YACGTR 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 288, 304
PspGI CCWGG 2 cut(s) 288, 304
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 4 cut(s) 23, 150, 158, 261
SatI GCNGC 2 cut(s) 312, 315
Sau3AI GATC 2 cut(s) 90, 215
ScrFI CCNGG 2 cut(s) 290, 306
SduI GDGCHC 2 cut(s) 77, 232
SetI ASST 4 cut(s) 74, 267, 291, 316
SfaNI GCATC 3 cut(s) 152, 169, 262
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 4 cut(s) 6, 159, 209, 355
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 288, 304
TaaI ACNGT 2 cut(s) 16, 156
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 214
TaqII GACCGA 1 cut(s) 218
TasI AATT 4 cut(s) 6, 159, 209, 355
TfiI GAWTC 2 cut(s) 245, 295
Tru1I TTAA 4 cut(s) 23, 150, 158, 261
Tru9I TTAA 4 cut(s) 23, 150, 158, 261
TscAI CASTG 2 cut(s) 58, 237
TseI GCWGC 2 cut(s) 311, 314
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 58, 237
VneI GTGCAC 1 cut(s) 228
XapI RAATTY 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.