Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23474839 .. 23478130

Gene Structure 3292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTGGGCGGAAAACAAAGCTCGGCGGGGGTTCCTCTGCTAGAAAAGTCTCTGGGGGTTTCCAGGGCTAGGACGCTCGGAAACATAATTGTCTCAGTTGTTGGGACCGGCATATTTGGCCTTCCATATGCTTTCCGAATTGCTGGTTGGCTCACCGACTCGCTTGGCGTCATTGTCACTGGTCTTACAACATACTACTGCATGCTCCTCTTTGTGCATTCCTGCATTTTAGGGAGAAATTGGAATCGGAAGAAGATTCAATGGTTACAAAATCTTATGGTGATTTGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

97

Amino Acids

10.63

Weight (kDa)

10.14

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	24 - 73	6.5e-11	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 26
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	54, 97
AoxI	GGCC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	145, 292
AvaII	GGWCC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	54, 97
BfaI	CTAG	2 cut(s)	41, 69
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	33, 106
BmrFI	CCNGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	54, 97
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	9, 26
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	33, 106
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	54, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	2 cut(s)	82, 157
CviAII	CATG	2 cut(s)	202, 291
CviJI	RGCY	4 cut(s)	21, 68, 120, 151
CviKI_1	RGCY	4 cut(s)	21, 68, 120, 151
DdeI	CTNAG	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	205, 294
FaiI	YATR	8 cut(s)	86, 113, 127, 129, 193, 203, 278, 292
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	201, 290
FauI	CCCGC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	127
FspBI	CTAG	2 cut(s)	41, 69
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	2 cut(s)	82, 157
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	205, 294
HinfI	GANTC	3 cut(s)	158, 244, 256
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	145, 292
Hpy188I	TCNGA	3 cut(s)	80, 137, 249
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	201, 217, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	205, 294
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	38, 49, 76, 121, 129, 165, 235
MaeI	CTAG	2 cut(s)	41, 69
MaeIII	GTNAC	2 cut(s)	175, 264
MboII	GAAGA	2 cut(s)	262, 265
MluCI	AATT	3 cut(s)	87, 138, 238
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	2 cut(s)	45, 218
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	2 cut(s)	205, 294
NlaIV	GGNNCC	2 cut(s)	33, 106
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	244, 256
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	33, 106
PspPI	GGNCC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	1 cut(s)	23
SinI	GGWCC	1 cut(s)	105
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	87, 138, 238
SsiI	CCGC	2 cut(s)	9, 26
SspMI	CTAG	2 cut(s)	41, 69
StyD4I	CCNGG	1 cut(s)	62
TasI	AATT	3 cut(s)	87, 138, 238
TfiI	GAWTC	2 cut(s)	244, 256
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	2 cut(s)	41, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.