RchiOBHm_Chr3g0477591

Amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
23479330 .. 23479733
404 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGTGGTGATGGTATTGGCGGTCTTGGCTTCATGCATGCCGGCGTTTGGAATGTTTACATCACTTGTGGGAAGTACAGTATGCACACTGATATCATTTGTTTTGCCAGCCACATTTCATTTAACATTATTTGGTTCTTCCCTACAGTTCTGGCAGAAGACCTTGGATTTTTCTTTATTTTACTGTGTGGATTACTTTTTGCGGTATATGGTACTTACAATGCCGTAG

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

6.49

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 62 5.3e-10 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 202
AfaI GTAC 2 cut(s) 76, 213
AfiI CCNNNNNNNGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 208
BfmI CTRYAG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 20, 202
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 79, 147, 185
BstC8I GCNNGC 3 cut(s) 38, 42, 108
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 38, 42, 108
Cfr10I RCCGGY 1 cut(s) 40
Csp6I GTAC 2 cut(s) 75, 212
CviAII CATG 2 cut(s) 33, 37
CviJI RGCY 2 cut(s) 29, 110
CviKI_1 RGCY 2 cut(s) 29, 110
CviQI GTAC 2 cut(s) 75, 212
Eco130I CCWWGG 1 cut(s) 162
Eco32I GATATC 1 cut(s) 93
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 36, 40
FaiI YATR 5 cut(s) 34, 38, 82, 207, 209
FatI CATG 2 cut(s) 32, 36
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 36, 40
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 3 cut(s) 79, 147, 185
HpyCH4V TGCA 2 cut(s) 36, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
Hsp92II CATG 2 cut(s) 36, 40
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
LpnPI CCDG 3 cut(s) 54, 120, 136
MboII GAAGA 2 cut(s) 129, 169
Mph1103I ATGCAT 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 1 cut(s) 122
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 26
NaeI GCCGGC 1 cut(s) 42
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 36, 40
NsiI ATGCAT 1 cut(s) 38
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PdiI GCCGGC 1 cut(s) 42
RsaI GTAC 2 cut(s) 76, 213
RsaNI GTAC 2 cut(s) 75, 212
SaqAI TTAA 1 cut(s) 122
SetI ASST 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 143
SgeI CNNG 8 cut(s) 37, 45, 49, 53, 77, 119, 163, 175
SphI GCATGC 1 cut(s) 40
SsiI CCGC 2 cut(s) 20, 202
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 79, 147, 185
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 21, 107
TspRI CASTG 1 cut(s) 93
XceI RCATGY 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.