Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23905922 .. 23907505

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAATGACATGCTTCCAAGCTTGGAAGAACAGGGAGTGTGTCAACTGTACCCAAAAGGCCCAAATATTGGTACACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATGTTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAGTTCACATTCTAGAACTTCATATAAAACGACGTAAACAAGCTGTGGAGGATGTAAAGAGAACTTTGCTTATTGATCTCAAGGTGTCATTTGAGTTGGTGCCAACAGGAGGAGAGAAGAAGCACAGGCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

9.66

Isoelectric Point (pI)

66.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	25 - 80	7.1e-17	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	151
AfaI	GTAC	2 cut(s)	50, 73
AfiI	CCNNNNNNNGG	2 cut(s)	68, 284
AgsI	TTSAA	1 cut(s)	121
AhlI	ACTAGT	1 cut(s)	175
AluBI	AGCT	2 cut(s)	21, 218
AluI	AGCT	2 cut(s)	21, 218
AoxI	GGCC	2 cut(s)	58, 152
AspS9I	GGNCC	2 cut(s)	59, 153
BanI	GGYRCC	1 cut(s)	274
BccI	CCATC	2 cut(s)	85, 165
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	3 cut(s)	165, 176, 188
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	59, 153
BmiI	GGNNCC	2 cut(s)	155, 276
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 284
Bse3DI	GCAATG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	68, 284
BseMI	GCAATG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	60, 154
BshNI	GGYRCC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	68, 284
BsnI	GGCC	2 cut(s)	60, 154
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	60, 154
BspLI	GGNNCC	2 cut(s)	155, 276
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	146
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	60, 154
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	59, 153
Csp6I	GTAC	2 cut(s)	49, 72
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	21, 60, 154, 164, 218
CviKI_1	RGCY	5 cut(s)	21, 60, 154, 164, 218
CviQI	GTAC	2 cut(s)	49, 72
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 87, 116, 198, 200
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	3 cut(s)	165, 176, 188
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	60, 154
Hin1II	CATG	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	44, 74, 181, 212
Hpy188I	TCNGA	2 cut(s)	141, 311
Hpy188III	TCNNGA	2 cut(s)	121, 188
Hpy8I	GTNNAC	4 cut(s)	44, 74, 181, 212
Hpy99I	CGWCG	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	89, 130
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	17, 146, 267, 286
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	165, 176, 188
MaeII	ACGT	1 cut(s)	208
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	4 cut(s)	38, 113, 128, 304
MnlI	CCTC	2 cut(s)	217, 278
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	155, 276
NspI	RCATGY	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	155, 276
PspPI	GGNCC	2 cut(s)	59, 153
RsaI	GTAC	2 cut(s)	50, 73
RsaNI	GTAC	2 cut(s)	49, 72
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	59, 153
SetI	ASST	4 cut(s)	23, 211, 220, 261
SfaNI	GCATC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	165, 176, 188
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	211
TauI	GCSGC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	17, 185
Van91I	CCANNNNNTGG	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	3 cut(s)	165, 176, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.