RchiOBHm_Chr3g0478441

Ubiquitin-2 like Rad60 SUMO-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
24202242 .. 24202838
597 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGCAGATTTTCATGAAAACTCTAACTAGGACAACCTTCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCAGAAATCCATTCAGAAGCCAAAATCAGAACAGTCATCTAGAGTCCGATGTGTGGCTGTCCATTTGTTGTATATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.45

Weight (kDa)

9.44

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 41 4.8e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 142
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 74
BfaI CTAG 2 cut(s) 27, 129
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 69
BspHI TCATGA 1 cut(s) 12
BspPI GGATC 1 cut(s) 82
BssMI GATC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 123
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 69
CciI TCATGA 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 69
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 83, 109, 146
CviKI_1 RGCY 3 cut(s) 83, 109, 146
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 44
FaeI CATG 1 cut(s) 16
FaiI YATR 4 cut(s) 14, 162, 164, 166
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 27, 129
GluI GCNGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 16
HinfI GANTC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 105, 118, 137
Hpy188III TCNNGA 4 cut(s) 13, 44, 91, 129
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 2 cut(s) 27, 129
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MflI RGATCY 1 cut(s) 87
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 1 cut(s) 40
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 87
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 141
SetI ASST 2 cut(s) 38, 51
Sfr274I CTCGAG 1 cut(s) 44
SgeI CNNG 7 cut(s) 25, 39, 56, 58, 97, 103, 141
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SspMI CTAG 2 cut(s) 27, 129
TaaI ACNGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 45, 69
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 2 cut(s) 27, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.