Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24302279 .. 24303002

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGAAAAATGTAATGAGAAGCAAGGCAAGAAGCAGCTCCTTATTTGAAAAATACTTGGAGATGACAAAACTGCTAGACTACAACATTGAGGGTGGCTCTGTCCTTCATTTAGTGCTTGCACTACGTGGTGGTAGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

46

Amino Acids

5.16

Weight (kDa)

9.69

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BsaAI	YACGTR	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	117
CviJI	RGCY	3 cut(s)	36, 96, 135
CviKI_1	RGCY	3 cut(s)	36, 96, 135
DraIII	CACNNNGTG	1 cut(s)	125
FaiI	YATR	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	74
FspEI	CC	9 cut(s)	8, 41, 52, 74, 75, 78, 111, 114, 116
GluI	GCNGC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	124
MnlI	CCTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	125
SatI	GCNGC	1 cut(s)	34
SetI	ASST	2 cut(s)	38, 127
SfcI	CTRYAG	1 cut(s)	137
SgeI	CNNG	6 cut(s)	34, 39, 67, 86, 128, 137
SspMI	CTAG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	127
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	17, 95
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.