mitochondrial respiratory chain complex I assembly
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1054200.v1.1 |
| prunus_persica | Prupe.7G082600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0479131 |
| rosa_samantha | Rh3AG222500 Rh3BG255000 Rh3CG250600 Rh3DG246900 |
| rosa_wichuraiana | Rw3G019940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 20 |
| AciI | CCGC | 1 cut(s) | 18 |
| AcsI | RAATTY | 2 cut(s) | 36, 128 |
| AcuI | CTGAAG | 1 cut(s) | 14 |
| AgsI | TTSAA | 2 cut(s) | 107, 142 |
| AluBI | AGCT | 2 cut(s) | 28, 56 |
| AluI | AGCT | 2 cut(s) | 28, 56 |
| ApeKI | GCWGC | 3 cut(s) | 53, 86, 163 |
| ApoI | RAATTY | 2 cut(s) | 36, 128 |
| BbvI | GCAGC | 3 cut(s) | 65, 98, 150 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BisI | GCNGC | 3 cut(s) | 54, 87, 164 |
| BlsI | GCNGC | 3 cut(s) | 55, 88, 165 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 57 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| BseMII | CTCAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 3 cut(s) | 65, 98, 150 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| Bsh1236I | CGCG | 1 cut(s) | 20 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspFNI | CGCG | 1 cut(s) | 20 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| Bst6I | CTCTTC | 1 cut(s) | 137 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 1 cut(s) | 152 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstFNI | CGCG | 1 cut(s) | 20 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 160 |
| BstNSI | RCATGY | 1 cut(s) | 154 |
| BstUI | CGCG | 1 cut(s) | 20 |
| BstV1I | GCAGC | 3 cut(s) | 65, 98, 150 |
| Cac8I | GCNNGC | 1 cut(s) | 152 |
| CseI | GACGC | 1 cut(s) | 9 |
| CviAII | CATG | 1 cut(s) | 151 |
| CviJI | RGCY | 2 cut(s) | 28, 56 |
| CviKI_1 | RGCY | 2 cut(s) | 28, 56 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 1 cut(s) | 137 |
| EarI | CTCTTC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 1 cut(s) | 14 |
| EcoRI | GAATTC | 1 cut(s) | 36 |
| FaeI | CATG | 1 cut(s) | 154 |
| FaiI | YATR | 2 cut(s) | 116, 152 |
| FatI | CATG | 1 cut(s) | 150 |
| Fnu4HI | GCNGC | 3 cut(s) | 54, 87, 164 |
| Fsp4HI | GCNGC | 3 cut(s) | 54, 87, 164 |
| FspBI | CTAG | 1 cut(s) | 41 |
| FspEI | CC | 9 cut(s) | 31, 37, 44, 57, 60, 77, 110, 111, 153 |
| GluI | GCNGC | 3 cut(s) | 54, 87, 164 |
| HgaI | GACGC | 1 cut(s) | 9 |
| Hin1II | CATG | 1 cut(s) | 154 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HpyCH4IV | ACGT | 2 cut(s) | 109, 159 |
| HpyCH4V | TGCA | 5 cut(s) | 53, 86, 137, 150, 154 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 160 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| HpySE526I | ACGT | 2 cut(s) | 109, 159 |
| Hsp92II | CATG | 1 cut(s) | 154 |
| LpnPI | CCDG | 1 cut(s) | 44 |
| Lsp1109I | GCAGC | 3 cut(s) | 65, 98, 150 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MaeII | ACGT | 2 cut(s) | 109, 159 |
| MaeIII | GTNAC | 1 cut(s) | 43 |
| MboII | GAAGA | 1 cut(s) | 154 |
| MluCI | AATT | 2 cut(s) | 36, 128 |
| MnlI | CCTC | 2 cut(s) | 68, 161 |
| MseI | TTAA | 1 cut(s) | 122 |
| MvnI | CGCG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 160 |
| NlaIII | CATG | 1 cut(s) | 154 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| NspI | RCATGY | 1 cut(s) | 154 |
| PaeI | GCATGC | 1 cut(s) | 154 |
| PkrI | GCNGC | 3 cut(s) | 55, 88, 165 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| SaqAI | TTAA | 1 cut(s) | 122 |
| SatI | GCNGC | 3 cut(s) | 54, 87, 164 |
| SetI | ASST | 6 cut(s) | 30, 58, 79, 96, 112, 162 |
| SphI | GCATGC | 1 cut(s) | 154 |
| Sse9I | AATT | 2 cut(s) | 36, 128 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspMI | CTAG | 1 cut(s) | 41 |
| TaiI | ACGT | 2 cut(s) | 112, 162 |
| TasI | AATT | 2 cut(s) | 36, 128 |
| Tru1I | TTAA | 1 cut(s) | 122 |
| Tru9I | TTAA | 1 cut(s) | 122 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 3 cut(s) | 53, 86, 163 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 87 |
| XapI | RAATTY | 2 cut(s) | 36, 128 |
| XceI | RCATGY | 1 cut(s) | 154 |
| XspI | CTAG | 1 cut(s) | 41 |