RchiOBHm_Chr3g0482121
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6 SMT family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
28209252 .. 28210425
1174 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGTCAAAATCTGGAGCACTGGATCTGGCTTCTCGGGTTGGTGGGAAGATTGAGAGAAACCAAGTTCTTTCAGCTGTCCACAAATATGAGAAGTATCACTTTGGGGATGAGGAAGACAGAAAAGCCAACTATACTGACATGGTTAACAAATACTATGATCTCGTCACAAGCTTTTATGAATATGGCTGGGGTGAGTCCTTCCATTTTGCACCAAGATAG

Protein Analysis

72

Amino Acids

8.4

Weight (kDa)

6.26

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 30
AluBI AGCT 2 cut(s) 74, 171
AluI AGCT 2 cut(s) 74, 171
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 22, 157
BspPI GGATC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 24
BssMI GATC 2 cut(s) 22, 157
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 25, 160
BstMBI GATC 2 cut(s) 22, 157
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 17
CviAII CATG 1 cut(s) 139
CviJI RGCY 5 cut(s) 29, 74, 125, 171, 186
CviKI_1 RGCY 5 cut(s) 29, 74, 125, 171, 186
DpnI GATC 2 cut(s) 24, 159
DpnII GATC 2 cut(s) 22, 157
Eco88I CYCGRG 1 cut(s) 33
FaeI CATG 1 cut(s) 142
FaiI YATR 6 cut(s) 87, 132, 140, 156, 177, 183
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 1 cut(s) 138
FokI GGATG 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 145
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 79, 145
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 79, 145
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 209
Hsp92II CATG 1 cut(s) 142
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 22, 157
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 5, 11, 172
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 24, 159
MboI GATC 2 cut(s) 22, 157
MboII GAAGA 2 cut(s) 58, 125
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 19
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 1 cut(s) 103
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 74
NdeII GATC 2 cut(s) 22, 157
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 163
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 22, 157
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 19
SetI ASST 2 cut(s) 76, 173
SmiMI CAYNNNNRTG 1 cut(s) 84
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.