Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

31708894 .. 31710172

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCTTGTTCATAGCCTCACTTTTCAGTTTTCACTTCGGTTCCTCTCTCAGACTCTTCCAGTTTAGGCTCTTTTCCTCTATCACGCAGGCACATTGCACCAGATCAGACACCAATCAAGGCCACCAAACCTTGCCATATGGATGTCGTCGTCACCAGCGTTATCAACTACATCATCTGGTGATGGGTTCATCAACACCGTCCACTATCGGTTATGGATTCAGACCATTCTCGGCCGACGCTTTAGTCGAGTATAGGCCCGATAAGATCAGAAGAGTCTACGGCTTCCCCAATGAACATCTTCGCACAAAGGAACAGGAGATCGCCAAGGAGTGGAAGGTCGTCAGTTCTCTCAGTTTTCTCTTCGTCTCTGGTTTCCGCTGCCGCTCTGGTCATCTAGGCCTTCAAGGAGCCGGATCCCGACTTCAAGAAGGTCAAGAACATCGAGCACAACGACCTGAGCAGGACCAATGCTCTGACTGCACCCTTCTTCTTCTTCATACTCCGCAGATCCAGAGCTTCTTTCTCTTTCGATCTCTCTTTGTATCTGTATATATCTATAGATTTCTCTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

192

Amino Acids

22.23

Weight (kDa)

9.71

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	3 cut(s)	379, 385, 506
AclWI	GGATC	3 cut(s)	411, 424, 505
AcoI	YGGCCR	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	407, 428
AluBI	AGCT	1 cut(s)	519
AluI	AGCT	1 cut(s)	519
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	411, 424, 505
AoxI	GGCC	5 cut(s)	3, 121, 234, 257, 400
ApeKI	GCWGC	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	258, 466
AsuHPI	GGTGA	2 cut(s)	146, 193
AvaII	GGWCC	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	559
BisI	GCNGC	2 cut(s)	382, 385
BlsI	GCNGC	2 cut(s)	383, 386
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	258, 466
BmiI	GGNNCC	3 cut(s)	43, 412, 418
Bpu10I	CCTNAGC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	64, 367, 450
BseNI	ACTGG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	466
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	5 cut(s)	5, 123, 236, 259, 402
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	5 cut(s)	5, 123, 236, 259, 402
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
BspACI	CCGC	3 cut(s)	379, 385, 506
BspANI	GGCC	5 cut(s)	5, 123, 236, 259, 402
BspCNI	CTCAG	3 cut(s)	63, 366, 451
BspLI	GGNNCC	3 cut(s)	43, 412, 418
BspPI	GGATC	3 cut(s)	411, 424, 505
BsrBI	CCGCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	3 cut(s)	62, 268, 368
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	50, 353, 459
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	6 cut(s)	107, 270, 324, 419, 513, 536
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	416, 510
BstYI	RGATCY	2 cut(s)	416, 510
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	5 cut(s)	5, 123, 236, 259, 402
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	258, 466
CseI	GACGC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	50, 353, 459
DpnI	GATC	6 cut(s)	106, 269, 323, 418, 512, 535
DpnII	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	62, 268, 368
EarI	CTCTTC	3 cut(s)	62, 268, 368
EclXI	CGGCCG	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	466
Eco52I	CGGCCG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	373
FaiI	YATR	9 cut(s)	14, 139, 141, 216, 255, 501, 553, 555, 561
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	382, 385
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	382, 385
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	382, 385
HaeIII	GGCC	5 cut(s)	5, 123, 236, 259, 402
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	54, 219, 276
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	2 cut(s)	146, 193
Hpy166II	GTNNAC	2 cut(s)	204, 280
Hpy188I	TCNGA	6 cut(s)	53, 109, 224, 272, 478, 578
Hpy188III	TCNNGA	4 cut(s)	420, 428, 437, 514
Hpy8I	GTNNAC	2 cut(s)	204, 280
Hpy99I	CGWCG	2 cut(s)	153, 242
HpyAV	CCTTC	4 cut(s)	331, 413, 425, 497
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	99, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpyF3I	CTNAG	3 cut(s)	50, 353, 459
Kzo9I	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	6 cut(s)	106, 269, 323, 418, 512, 535
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
MboII	GAAGA	7 cut(s)	49, 285, 293, 355, 482, 485, 488
MflI	RGATCY	2 cut(s)	416, 510
MhlI	GDGCHC	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	48, 285
MnlI	CCTC	3 cut(s)	28, 55, 88
MroXI	GAANNNNTTC	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	480
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
NlaIV	GGNNCC	3 cut(s)	43, 412, 418
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	3 cut(s)	157, 246, 451
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	383, 386
PleI	GAGTC	2 cut(s)	48, 284
PpsI	GAGTC	2 cut(s)	48, 284
PspN4I	GGNNCC	3 cut(s)	43, 412, 418
PspPI	GGNCC	2 cut(s)	258, 466
PsuI	RGATCY	2 cut(s)	416, 510
RseI	CAYNNNNRTG	1 cut(s)	142
SatI	GCNGC	2 cut(s)	382, 385
Sau3AI	GATC	6 cut(s)	104, 267, 321, 416, 510, 533
Sau96I	GGNCC	2 cut(s)	258, 466
SchI	GAGTC	2 cut(s)	48, 285
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	5 cut(s)	134, 342, 436, 460, 521
SfcI	CTRYAG	1 cut(s)	559
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	142
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	3 cut(s)	379, 385, 506
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	249, 445, 532
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	180, 309, 488
Van91I	CCANNNNNTGG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.