RchiOBHm_Chr3g0486321

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
33207623 .. 33210293
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGTCAAGGATGAGAAGACCCTCCTCGTTGGTGCGAAGCCAGTCGCCGTCTTTGGGCTCAGAAACCTAGAGGAGATCCCATGGAGTCGTATGGTGCTGATATTGTCCACTGCAATGTTAAAAGACGAGGACAAAGCTGCTGCTCACTTGAAGATGGAGCTGCTGGGATTGTTAATGATGGGTCTGAGATGGTGTGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008886 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0022414 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0034285 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042493 GO:0042542 GO:0042579 GO:0042742 GO:0042866 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043891 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046677 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051775 GO:0055044 GO:0055086 GO:0055114 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.53

Weight (kDa)

8.93

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024899)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486321
rosa_rugosa Rorug04G0007900
rosa_samantha Rh5DG377600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 137, 160
AluI AGCT 2 cut(s) 137, 160
AlwI GGATC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 137, 140, 160
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 124, 127, 147
BccI CCATC 3 cut(s) 148, 172, 183
BceAI ACGGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 68
BisI GCNGC 3 cut(s) 138, 141, 161
BlsI GCNGC 3 cut(s) 139, 142, 162
BpiI GAAGAC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 73, 176
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 14, 86
BseXI GCAGC 3 cut(s) 124, 127, 147
BseYI CCCAGC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 72, 177
BspPI GGATC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 59, 185
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 124, 127, 147
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
CviAII CATG 1 cut(s) 81
CviJI RGCY 4 cut(s) 40, 58, 137, 160
CviKI_1 RGCY 4 cut(s) 40, 58, 137, 160
DdeI CTNAG 2 cut(s) 59, 185
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 84
FaiI YATR 2 cut(s) 82, 92
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 138, 141, 161
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 138, 141, 161
FspBI CTAG 1 cut(s) 68
GluI GCNGC 3 cut(s) 138, 141, 161
GsaI CCCAGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 84
HinfI GANTC 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 62, 186
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 59, 185
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 54, 149
Lsp1109I GCAGC 3 cut(s) 124, 127, 147
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 28, 163
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 4 cut(s) 32, 35, 64, 121
MseI TTAA 2 cut(s) 119, 173
MslI CAYNNNNRTG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 80
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 84
PkrI GCNGC 3 cut(s) 139, 142, 162
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 119, 173
SatI GCNGC 3 cut(s) 138, 141, 161
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 69, 139, 162
SgeI CNNG 8 cut(s) 19, 38, 53, 80, 93, 139, 160, 176
SmiMI CAYNNNNRTG 1 cut(s) 113
SspMI CTAG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 80
Tru1I TTAA 2 cut(s) 119, 173
Tru9I TTAA 2 cut(s) 119, 173
TscAI CASTG 1 cut(s) 115
TseI GCWGC 3 cut(s) 137, 140, 160
TspRI CASTG 1 cut(s) 115
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.