RchiOBHm_Chr3g0486391

phenylalanine--tRNA ligase, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
33300092 .. 33304367
4276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGGGAAAAGTGGTTGGAGGTTTTGGGTTGCGGAGTAACAGAACAAGAAATATTGAAGAGAAGTGGGAAAACAGAATGTTGCTTGGGCTTTCGGACTTGGATTGGAGCGGCTGGCAATGGTTCTATTTGACATCCCTGATATTCGCCTTTTCTGGTCAACTGATGACATCCCTGACTTGGGCTCTCAGGGGCAGCTGGGAGTCAAGTTCAAGCCATATTCAAAGTATCCTCCGTGTTACAAAGATGTTAGTTTTTGGATCAAGTGAATCTTTCACTGAAAACAATTTATGTGAAGTTGTCAGAGAGGTTGCTGGAGATCTTGCTAAGGAGGTGCAATTGATAGACAATTTCACAAACAAGAAAGGAATGACCAGTCACTGTTACAGGATTGCTTATATAGGTCTACGGAACGATCACTTACAGACGAGGAAGTCAATAAATTGCAGGGTACTGTAA

Protein Analysis

151

Amino Acids

17.32

Weight (kDa)

9.15

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 403
AciI CCGC 2 cut(s) 31, 108
AclWI GGATC 1 cut(s) 265
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 177, 178
AgsI TTSAA 3 cut(s) 56, 210, 221
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 204
BciVI GTATCC 1 cut(s) 236
BfuI GTATCC 1 cut(s) 236
BglII AGATCT 1 cut(s) 316
BisI GCNGC 2 cut(s) 109, 193
BlsI GCNGC 2 cut(s) 110, 194
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 178
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 2 cut(s) 131, 167
BseLI CCNNNNNNNGG 2 cut(s) 177, 178
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 177, 178
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 257, 316, 412
BspACI CCGC 2 cut(s) 31, 108
BspCNI CTCAG 1 cut(s) 198
BspPI GGATC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 372
BssMI GATC 3 cut(s) 257, 316, 412
Bst4CI ACNGT 2 cut(s) 380, 453
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 185, 324
BstF5I GGATG 2 cut(s) 131, 167
BstKTI GATC 3 cut(s) 260, 319, 415
BstMBI GATC 3 cut(s) 257, 316, 412
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 131, 167
BtsIMutI CAGTG 2 cut(s) 273, 376
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 378
Csp6I GTAC 1 cut(s) 449
CviJI RGCY 5 cut(s) 88, 111, 182, 195, 213
CviKI_1 RGCY 5 cut(s) 88, 111, 182, 195, 213
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 2 cut(s) 185, 324
DpnI GATC 3 cut(s) 259, 318, 414
DpnII GATC 3 cut(s) 257, 316, 412
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 184
FaiI YATR 4 cut(s) 216, 289, 396, 398
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 109, 193
FokI GGATG 2 cut(s) 118, 154
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 109, 193
GluI GCNGC 2 cut(s) 109, 193
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 333
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 2 cut(s) 200, 266
Hpy166II GTNNAC 2 cut(s) 158, 404
Hpy188I TCNGA 2 cut(s) 94, 302
Hpy8I GTNNAC 2 cut(s) 158, 404
HpyCH4III ACNGT 2 cut(s) 380, 453
HpyCH4V TGCA 2 cut(s) 334, 444
HpyF3I CTNAG 2 cut(s) 185, 324
Kzo9I GATC 3 cut(s) 257, 316, 412
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 35, 235, 374, 380
MalI GATC 3 cut(s) 259, 318, 414
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 257, 316, 412
MboII GAAGA 1 cut(s) 68
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 4 cut(s) 283, 335, 346, 439
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 5 cut(s) 11, 239, 298, 322, 420
MspA1I CMGCKG 1 cut(s) 195
MunI CAATTG 1 cut(s) 335
NdeII GATC 3 cut(s) 257, 316, 412
NmuCI GTSAC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 110, 194
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SatI GCNGC 2 cut(s) 109, 193
Sau3AI GATC 3 cut(s) 257, 316, 412
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 184
SetI ASST 5 cut(s) 22, 197, 309, 333, 403
Sse9I AATT 4 cut(s) 283, 335, 346, 439
SsiI CCGC 2 cut(s) 31, 108
SspI AATATT 1 cut(s) 52
TaaI ACNGT 2 cut(s) 380, 453
TasI AATT 4 cut(s) 283, 335, 346, 439
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 2 cut(s) 280, 383
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 374
TspGWI ACGGA 2 cut(s) 221, 421
TspRI CASTG 2 cut(s) 280, 383
XmiI GTMKAC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.