Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

33671969 .. 33672355

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGCTTGGTAGAGAAATTCATGACTATGTTAGAGCTGAGCTTAAGTTCACTACTATAATCGGAAATTTGGTGTTGCATGTATATGCTATGTGTGGTTATTTAAGTGAAGCAAGGAAAGTTTTCGATGAAATTCCGTTGAAAAATGTCTTGTGTTGGACTACTATGATGAATGGGTATGTGAATTGTGGTATGCTAGATGAGGCTAGAAAGTTGTTTGATAGGAGTCTTACTAAGGATGTTGTTCTATGGACAGCTATGATGAATGGAATGTACAATATAACCAATTTGATGAAGCAGTGGCTATATTCCAAGAGATGCAATTTAGATGAGTTCAAGTGGATAAATTCACAGTCGTTGCACTCCTCACAGGCTATGCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

128

Amino Acids

14.99

Weight (kDa)

7.67

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	52 - 76	5.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	18, 67, 132, 346
AfaI	GTAC	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	142, 337
AluBI	AGCT	4 cut(s)	7, 38, 43, 257
AluI	AGCT	4 cut(s)	7, 38, 43, 257
ApoI	RAATTY	4 cut(s)	18, 67, 132, 346
Asp700I	GAANNNNTTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	197, 207
BfrI	CTTAAG	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	273
Bsp1720I	GCTNAGC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	39, 234, 380
BstF5I	GGATG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	23, 80
CviJI	RGCY	7 cut(s)	7, 38, 43, 206, 257, 304, 374
CviKI_1	RGCY	7 cut(s)	7, 38, 43, 206, 257, 304, 374
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	3 cut(s)	39, 234, 380
FaeI	CATG	2 cut(s)	26, 83
FatI	CATG	2 cut(s)	22, 79
FokI	GGATG	1 cut(s)	251
FspBI	CTAG	2 cut(s)	197, 207
Hin1II	CATG	2 cut(s)	26, 83
HinfI	GANTC	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	79, 321, 361
HpyF3I	CTNAG	3 cut(s)	39, 234, 380
Hsp92II	CATG	2 cut(s)	26, 83
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	356
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	197, 207
MluCI	AATT	7 cut(s)	18, 67, 132, 184, 286, 322, 346
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	196, 376
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	2 cut(s)	45, 104
MslI	CAYNNNNRTG	2 cut(s)	27, 84
MspCI	CTTAAG	1 cut(s)	44
NlaIII	CATG	2 cut(s)	26, 83
NspI	RCATGY	1 cut(s)	83
PagI	TCATGA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	27, 84
SaqAI	TTAA	2 cut(s)	45, 104
SchI	GAGTC	1 cut(s)	235
SetI	ASST	4 cut(s)	9, 40, 45, 259
SfaNI	GCATC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	27, 84
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	7 cut(s)	18, 67, 132, 184, 286, 322, 346
SspMI	CTAG	2 cut(s)	197, 207
TaaI	ACNGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	126
TasI	AATT	7 cut(s)	18, 67, 132, 184, 286, 322, 346
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	45, 104
Tru9I	TTAA	2 cut(s)	45, 104
TscAI	CASTG	1 cut(s)	305
TspDTI	ATGAA	5 cut(s)	11, 144, 185, 278, 308
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	4 cut(s)	18, 67, 132, 346
XceI	RCATGY	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	2 cut(s)	197, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.