RchiOBHm_Chr3g0491431

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
38159247 .. 38161493
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGAGTTGGATCTTAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCCTCTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTATGCTACATTTGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGCATCCTCTGAAGCTCACCGGTATGCATATCGTGAAGGAATCCGTTTTGATAGAATCAACGACCCATCAGGGTACAGTAGTTGGCCTGAGTATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAAATAAAGGAAGATGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGTAATTCCCACCAATCTTTTCCATCATAACATTGTTATCAATGGTAATCATGTCATTAATGGGCTTGTTAATGTGCTCGGTAGAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCATCCGCAAGCTAAAGGGGTGAGCGGTGAATATTTTTCAGACAGTATATTTCCAAGCCAAGATTGCTTTAGTAAGATTTTACTTGATACAATCTCTCTTCCTTTCAATTGTTTAATTCCTCTAATTAAAAGTCTATTGGTTTACCAAAAACAATTATTAGATCCTGAATTTTTTATTTTTTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

245

Amino Acids

27.19

Weight (kDa)

8.7

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 2 - 84 2.5e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 573
AciI CCGC 2 cut(s) 554, 573
AclWI GGATC 2 cut(s) 18, 704
AcsI RAATTY 2 cut(s) 38, 716
AcuI CTGAAG 2 cut(s) 128, 249
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 311
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 140, 192, 357, 655
AjnI CCWGG 1 cut(s) 406
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 4 cut(s) 233, 325, 329, 560
AluI AGCT 4 cut(s) 233, 325, 329, 560
Alw21I GWGCWC 1 cut(s) 489
AlwI GGATC 2 cut(s) 18, 704
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 2 cut(s) 38, 716
AseI ATTAAT 1 cut(s) 468
AsiGI ACCGGT 1 cut(s) 237
AsuHPI GGTGA 4 cut(s) 227, 395, 580, 587
AsuNHI GCTAGC 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 283, 316
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 536
BccI CCATC 3 cut(s) 292, 368, 441
BciT130I CCWGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 3 cut(s) 53, 230, 559
BmtI GCTAGC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 545
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 221, 550
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 10, 709
BspACI CCGC 2 cut(s) 554, 573
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 329
BspPI GGATC 2 cut(s) 18, 704
BsrBI CCGCTC 1 cut(s) 573
BsrDI GCAATG 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 10, 709
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 296, 593
Bst6I CTCTTC 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 327, 342, 558
BstDEI CTNAG 2 cut(s) 14, 306
BstF5I GGATG 2 cut(s) 221, 550
BstKTI GATC 2 cut(s) 13, 712
BstMBI GATC 2 cut(s) 10, 709
BstMWI GCNNNNNNNGC 1 cut(s) 612
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 10, 709
BstYI RGATCY 2 cut(s) 10, 709
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 221, 550
Cac8I GCNNGC 3 cut(s) 327, 342, 558
Cfr10I RCCGGY 1 cut(s) 237
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 2 cut(s) 341, 461
CviJI RGCY 7 cut(s) 233, 304, 325, 329, 475, 560, 606
CviKI_1 RGCY 7 cut(s) 233, 304, 325, 329, 475, 560, 606
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 14, 306
DpnI GATC 2 cut(s) 12, 711
DpnII GATC 2 cut(s) 10, 709
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 128, 249
EcoRII CCWGG 1 cut(s) 406
EcoT22I ATGCAT 2 cut(s) 223, 247
FaeI CATG 2 cut(s) 344, 464
FatI CATG 2 cut(s) 340, 460
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 208, 537
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 525
HaeIII GGCC 1 cut(s) 304
HapII CCGG 1 cut(s) 238
Hin1II CATG 2 cut(s) 344, 464
HinfI GANTC 2 cut(s) 258, 273
HpaII CCGG 1 cut(s) 238
HphI GGTGA 4 cut(s) 227, 395, 580, 587
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 3 cut(s) 49, 229, 589
Hpy188III TCNNGA 2 cut(s) 251, 713
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 197, 248
HpyCH4III ACNGT 2 cut(s) 296, 593
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 9 cut(s) 44, 95, 185, 221, 245, 340, 392, 398, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 612
HpyF3I CTNAG 2 cut(s) 14, 306
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 344, 464
Kzo9I GATC 2 cut(s) 10, 709
LmnI GCTCC 1 cut(s) 521
LpnPI CCDG 9 cut(s) 48, 81, 251, 273, 318, 393, 420, 503, 726
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 3 cut(s) 53, 230, 559
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 187
MalI GATC 2 cut(s) 12, 711
MbiI CCGCTC 1 cut(s) 573
MboI GATC 2 cut(s) 10, 709
MboII GAAGA 2 cut(s) 383, 638
MfeI CAATTG 1 cut(s) 655
MflI RGATCY 2 cut(s) 10, 709
MhlI GDGCHC 1 cut(s) 489
MnlI CCTC 5 cut(s) 27, 70, 81, 235, 678
Mph1103I ATGCAT 2 cut(s) 223, 247
MseI TTAA 7 cut(s) 83, 87, 468, 480, 504, 662, 675
MslI CAYNNNNRTG 2 cut(s) 240, 408
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 408
MunI CAATTG 1 cut(s) 655
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 612
NdeII GATC 2 cut(s) 10, 709
NheI GCTAGC 1 cut(s) 325
NlaIII CATG 2 cut(s) 344, 464
NsiI ATGCAT 2 cut(s) 223, 247
NspI RCATGY 1 cut(s) 344
OliI CACNNNNGTG 1 cut(s) 408
PacI TTAATTAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 344
PfeI GAWTC 2 cut(s) 258, 273
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 1 cut(s) 526
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PsuI RGATCY 2 cut(s) 10, 709
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 240, 408
SaqAI TTAA 7 cut(s) 83, 87, 468, 480, 504, 662, 675
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 2 cut(s) 10, 709
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 489
SetI ASST 6 cut(s) 169, 190, 235, 327, 331, 562
SfaNI GCATC 3 cut(s) 53, 230, 559
SmiMI CAYNNNNRTG 2 cut(s) 240, 408
SphI GCATGC 1 cut(s) 344
SsiI CCGC 2 cut(s) 554, 573
SspI AATATT 1 cut(s) 581
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 296, 593
TaiI ACGT 1 cut(s) 190
TfiI GAWTC 2 cut(s) 258, 273
Tru1I TTAA 7 cut(s) 83, 87, 468, 480, 504, 662, 675
Tru9I TTAA 7 cut(s) 83, 87, 468, 480, 504, 662, 675
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 251
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 38, 716
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 326
Zsp2I ATGCAT 2 cut(s) 223, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.