RchiOBHm_Chr3g0491461

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
38174066 .. 38175078
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
ATGAAATCTAAAAAGATAAATGATTGTTTAGATCGTTTTCATGTTGAGATCCCAACGCCAGGTGACCAAAAGGAAGGGCCTCCATCTATGCCTCAGGCTGTTTTAGAAGCTAAGGCTAAGCAAGCAGCAGAGAAAGAAAAGAGAACTACTGAAAAGGATTTGGAGAATGAAAATGGTGGTGCTGGTGTATACTCTGCCAGTTTGAAGATGAATTATATCCTTGCTCATGATGAGTGGAAAGAGGACATCATGCCTGAAATTCTTGATAAGCACAATGTATTTAACTTTGTTGATCCCGATATTTTGAATAGGCTTGAGGAGTTAGAACGAGAAGAAGGAATCCGGCAGGCAGAGGTGGATGATGATGTGGAGATGGGTGGAATGGAGTTGACTCCAGAAGAGCAGAAGACATTGGCTCAGATAAGGAAAAAGAAAAGCTTGCTGATTCAACAACATAGAATTAAGAAAATTACCGCGGAAAGTCGACCTACAGTACGTAGGATATTTGACAAGGACGAGTTCACAAAGAGAGTGTGGAGGCAACTGTCAGAGTTGGGAATTGATCCTCGTAGGGCAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

194

Amino Acids

22.45

Weight (kDa)

5.57

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOGCT PF08155 48 - 101 9.1e-23 NOGCT (NUC087) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 189, 484
AccII CGCG 1 cut(s) 476
AciI CCGC 2 cut(s) 474, 476
AclWI GGATC 3 cut(s) 43, 287, 557
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 205, 307, 449
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 110, 438
AluI AGCT 2 cut(s) 110, 438
AlwI GGATC 3 cut(s) 43, 287, 557
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 91, 367
BciT130I CCWGG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 474
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 107, 431
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 4 cut(s) 31, 48, 292, 562
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 474, 476
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 106, 430
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 226
BspPI GGATC 3 cut(s) 43, 287, 557
BspQI GCTCTTC 1 cut(s) 393
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 4 cut(s) 31, 48, 292, 562
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 493, 546
Bst6I CTCTTC 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 123, 348, 440
BstDEI CTNAG 4 cut(s) 93, 111, 117, 417
BstDSI CCRYGG 1 cut(s) 474
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 4 cut(s) 34, 51, 295, 565
BstMBI GATC 4 cut(s) 31, 48, 292, 562
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 60
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 489
BstSNI TACGTA 1 cut(s) 497
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BstZ17I GTATAC 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 123, 348, 440
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 77
Cfr42I CCGCGG 1 cut(s) 477
Csp6I GTAC 1 cut(s) 494
CviAII CATG 3 cut(s) 41, 227, 250
CviJI RGCY 7 cut(s) 79, 98, 110, 116, 313, 416, 438
CviKI_1 RGCY 7 cut(s) 79, 98, 110, 116, 313, 416, 438
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 4 cut(s) 93, 111, 117, 417
DpnI GATC 4 cut(s) 33, 50, 294, 564
DpnII GATC 4 cut(s) 31, 48, 292, 562
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco105I TACGTA 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 44, 230, 253
FaiI YATR 7 cut(s) 42, 89, 190, 216, 228, 251, 456
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 3 cut(s) 40, 226, 249
FblI GTMKAC 2 cut(s) 189, 484
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 343
Hin1II CATG 3 cut(s) 44, 230, 253
HincII GTYRAC 2 cut(s) 390, 485
HindII GTYRAC 2 cut(s) 390, 485
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 3 cut(s) 339, 391, 445
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 4 cut(s) 190, 390, 485, 522
Hpy188I TCNGA 2 cut(s) 420, 550
Hpy188III TCNNGA 4 cut(s) 227, 263, 296, 395
Hpy8I GTNNAC 4 cut(s) 190, 390, 485, 522
HpyAV CCTTC 2 cut(s) 68, 329
HpyCH4III ACNGT 2 cut(s) 493, 546
HpyCH4IV ACGT 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 4 cut(s) 93, 111, 117, 417
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 3 cut(s) 44, 230, 253
KspI CCGCGG 1 cut(s) 477
Kzo9I GATC 4 cut(s) 31, 48, 292, 562
LguI GCTCTTC 1 cut(s) 393
LpnPI CCDG 9 cut(s) 45, 72, 80, 168, 211, 267, 332, 356, 408
Lsp1109I GCAGC 1 cut(s) 137
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 62
MalI GATC 4 cut(s) 33, 50, 294, 564
MboI GATC 4 cut(s) 31, 48, 292, 562
MboII GAAGA 4 cut(s) 217, 344, 410, 418
MflI RGATCY 1 cut(s) 48
MluCI AATT 5 cut(s) 211, 258, 459, 468, 558
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 7 cut(s) 90, 102, 235, 310, 346, 531, 576
MseI TTAA 2 cut(s) 282, 462
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 4 cut(s) 31, 48, 292, 562
NlaIII CATG 3 cut(s) 44, 230, 253
NmuCI GTSAC 1 cut(s) 62
PagI TCATGA 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 339, 445
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SacII CCGCGG 1 cut(s) 477
SalI GTCGAC 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 282, 462
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 4 cut(s) 31, 48, 292, 562
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 60
SetI ASST 6 cut(s) 64, 112, 357, 440, 490, 499
SfcI CTRYAG 1 cut(s) 489
Sfr303I CCGCGG 1 cut(s) 477
SgrBI CCGCGG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SnaBI TACGTA 1 cut(s) 497
Sse9I AATT 5 cut(s) 211, 258, 459, 468, 558
SsiI CCGC 2 cut(s) 474, 476
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 493, 546
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 484
TasI AATT 5 cut(s) 211, 258, 459, 468, 558
TfiI GAWTC 2 cut(s) 339, 445
Tru1I TTAA 2 cut(s) 282, 462
Tru9I TTAA 2 cut(s) 282, 462
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 17, 29, 183, 224
XapI RAATTY 1 cut(s) 258
XmiI GTMKAC 2 cut(s) 189, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.