RchiOBHm_Chr3g0492021

MOSC domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
38782727 .. 38783890
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGATCAGTATGACTATGCATAATTCTAAATCTTGGAACTCCTACTTTGATGTCACAGCATTCTTGTTAACGGACGGATGTGAACCATTTTCCGAAGACCTATTGACAGAGATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTTTACCCTTCTGCAATTTTTGCCCGTCTGATGACTTTTCTATTTTCAAAAGACAATCAATTGATGCGTCTCCCAAACTCATATGTGAATCTTGTTTGGAGAGACTCTCTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAATTTTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.08

Weight (kDa)

5.7

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 137, 195
AluBI AGCT 2 cut(s) 127, 148
AluI AGCT 2 cut(s) 127, 148
Alw26I GTCTC 3 cut(s) 221, 243, 325
ApoI RAATTY 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 1 cut(s) 310
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 221, 243, 325
BglII AGATCT 1 cut(s) 295
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 238, 270
BpuEI CTTGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 3 cut(s) 221, 243, 325
BsmBI CGTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 3, 111, 295
BspTNI GGTCTC 1 cut(s) 325
BssMI GATC 3 cut(s) 3, 111, 295
Bst6I CTCTTC 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 3 cut(s) 6, 114, 298
BstMAI GTCTC 3 cut(s) 221, 243, 325
BstMBI GATC 3 cut(s) 3, 111, 295
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtsCI GGATG 1 cut(s) 83
CseI GACGC 1 cut(s) 203
CviJI RGCY 2 cut(s) 127, 148
CviKI_1 RGCY 2 cut(s) 127, 148
DpnI GATC 3 cut(s) 5, 113, 297
DpnII GATC 3 cut(s) 3, 111, 295
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 221
FaiI YATR 6 cut(s) 11, 17, 21, 229, 231, 306
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 90
HgaI GACGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 235, 251
HpaI GTTAAC 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 69, 83
Hpy188I TCNGA 2 cut(s) 94, 177
Hpy188III TCNNGA 3 cut(s) 115, 283, 313
Hpy8I GTNNAC 2 cut(s) 69, 83
HpyAV CCTTC 3 cut(s) 165, 265, 280
HpyCH4V TGCA 2 cut(s) 19, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 3, 111, 295
LpnPI CCDG 2 cut(s) 100, 246
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 5, 113, 297
MboI GATC 3 cut(s) 3, 111, 295
MboII GAAGA 2 cut(s) 107, 315
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 295
MluCI AATT 5 cut(s) 22, 162, 206, 335, 343
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 2 cut(s) 257, 320
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 68, 346
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 3, 111, 295
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 21
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 235
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 295
SaqAI TTAA 2 cut(s) 68, 346
Sau3AI GATC 3 cut(s) 3, 111, 295
SchI GAGTC 1 cut(s) 245
SetI ASST 6 cut(s) 102, 129, 142, 150, 268, 291
SfaNI GCATC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 5 cut(s) 22, 162, 206, 335, 343
TasI AATT 5 cut(s) 22, 162, 206, 335, 343
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 68, 346
Tru9I TTAA 2 cut(s) 68, 346
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 2 cut(s) 86, 90
XapI RAATTY 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.