RchiOBHm_Chr3g0492891

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
39898126 .. 39899212
1087 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAGAGTCTTCGGAGTTGAGTTGATTCTCACTGACCCTACAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACTCTCTGGAATCCACTCCAAATGCTCTTATCCTCCAACAATTCTCAAACCCTGCCAATACTCAGTGTTTAGGTCATTCAATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTGAGTACCAAATACATATATAGCACATATATGCGTTTTATCTGGCTTGCTTTCATATTCTTAATATTGAACTTTATGACTCTCATATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

6.54

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 156, 181, 295
Asp700I GAANNNNTTC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 238
BccI CCATC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 138
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 30, 146
Cac8I GCNNGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 199
CviJI RGCY 2 cut(s) 71, 271
CviKI_1 RGCY 2 cut(s) 71, 271
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 42
FaeI CATG 1 cut(s) 202
FatI CATG 1 cut(s) 198
FokI GGATG 1 cut(s) 61
Hin1II CATG 1 cut(s) 202
HinfI GANTC 6 cut(s) 6, 25, 77, 86, 177, 304
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 64, 83, 221
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 1 cut(s) 202
LpnPI CCDG 4 cut(s) 68, 141, 147, 253
MluCI AATT 2 cut(s) 116, 156
MlyI GAGTC 3 cut(s) 15, 71, 298
MmeI TCCRAC 2 cut(s) 136, 154
MnlI CCTC 3 cut(s) 47, 119, 217
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 254
NlaIII CATG 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 25, 86, 177
PleI GAGTC 3 cut(s) 14, 71, 298
PpsI GAGTC 3 cut(s) 14, 71, 298
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 287
SchI GAGTC 3 cut(s) 15, 71, 298
SetI ASST 2 cut(s) 151, 228
SgeI CNNG 8 cut(s) 76, 95, 140, 174, 211, 233, 280, 284
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 116, 156
SspI AATATT 1 cut(s) 291
TaaI ACNGT 1 cut(s) 61
TasI AATT 2 cut(s) 116, 156
TfiI GAWTC 3 cut(s) 25, 86, 177
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 2 cut(s) 37, 146
TspDTI ATGAA 1 cut(s) 268
TspRI CASTG 2 cut(s) 37, 146
XagI CCTNNNNNAGG 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.