RchiOBHm_Chr3g0494691

Zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
43577983 .. 43579158
1176 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGCCTGCACCTGAGAAAAGTTGTGAAGCAAAGCCTCCCAGTTTTTGGTCTGGTCGTAGAGGGAAGGCTGGAAAGCAGTCTCGTTTATCCCCTGCCGGCGCACCAGATGTTTCTCCTCCCGTCTTTGGTACCTCACCCCAAAAGCAAGTACACCCATCAGCACCCGTTTCTCGTTCAGTACCAGCATCTAGTCCGTTGCCTCATGTAGTTTTTGCTCATGTTCTTCCGCCATCAAAGAGTGAATCAGATAGTAGCCATTCTTACACAGGGCAATCACCTGGACCATCGCCGTCAACATTAATTGCAGCAGCTTCTGCAGCTCTTCTACCTTGTGTTCAATGGGCATTATCACTATTCCTAGCTTTGGTGTTACTTTATAACAGCAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.43

Weight (kDa)

9.83

Isoelectric Point (pI)

88.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 45
AciI CCGC 1 cut(s) 227
AfaI GTAC 3 cut(s) 130, 150, 180
AfiI CCNNNNNNNGG 3 cut(s) 45, 125, 364
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 311, 320, 362
AluI AGCT 3 cut(s) 311, 320, 362
Alw26I GTCTC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 305, 308, 317
AseI ATTAAT 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 126, 267
AvaII GGWCC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 317, 320, 329
BccI CCATC 3 cut(s) 163, 238, 292
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 189, 359
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 306, 309, 318
BlsI GCNGC 3 cut(s) 307, 310, 319
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 125, 364
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 45, 125, 364
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 317, 320, 329
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 45, 125, 364
BsmAI GTCTC 1 cut(s) 84
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 6, 97
BstDEI CTNAG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 314, 317
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 317, 320, 329
BtgZI GCGATG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 6, 97
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 129, 149, 179
CviAII CATG 2 cut(s) 203, 218
CviJI RGCY 6 cut(s) 34, 68, 255, 311, 320, 362
CviKI_1 RGCY 6 cut(s) 34, 68, 255, 311, 320, 362
CviQI GTAC 3 cut(s) 129, 149, 179
DdeI CTNAG 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 206, 221
FaiI YATR 3 cut(s) 204, 219, 378
FatI CATG 2 cut(s) 202, 217
Fnu4HI GCNGC 3 cut(s) 306, 309, 318
Fsp4HI GCNGC 3 cut(s) 306, 309, 318
FspBI CTAG 2 cut(s) 189, 359
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 306, 309, 318
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 206, 221
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 96
HphI GGTGA 2 cut(s) 126, 267
Hpy166II GTNNAC 2 cut(s) 151, 294
Hpy188I TCNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 151, 294
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 8, 305, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 317
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 206, 221
HspAI GCGC 1 cut(s) 99
KpnI GGTACC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 327
Lsp1109I GCAGC 3 cut(s) 317, 320, 329
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 189, 359
MaeIII GTNAC 1 cut(s) 369
MboII GAAGA 2 cut(s) 215, 314
MluCI AATT 1 cut(s) 300
MnlI CCTC 6 cut(s) 45, 53, 126, 142, 210, 380
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 1 cut(s) 299
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 314, 317
NaeI GCCGGC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 206, 221
NlaIV GGNNCC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 327
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 3 cut(s) 307, 310, 319
PshBI ATTAAT 1 cut(s) 299
PsiI TTATAA 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 3 cut(s) 130, 150, 180
RsaNI GTAC 3 cut(s) 129, 149, 179
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 3 cut(s) 306, 309, 318
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 279
SetI ASST 7 cut(s) 13, 134, 280, 313, 322, 331, 364
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 281
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 189, 359
StyD4I CCNGG 1 cut(s) 277
TasI AATT 1 cut(s) 300
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseI GCWGC 3 cut(s) 305, 308, 317
TspGWI ACGGA 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 299
XspI CTAG 2 cut(s) 189, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.