Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43981413 .. 43981811

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGGAATACTATTCCTTTTTGGTGTTTGGTTGGTGGGTTTAGTTCGGAGGTATGCTTTGGGTTTAAAAGCTGCATTTGTGATGCTGCATCTGATATATGTTGGTGTTCTTTTTCTGTTTGATGGAGGTTTGATAGAGAAAACTAAAAGAGAATCATGGTATGCTATTTCTTCTTTACTCTTTGTTTATCTTGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0016020 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0050896 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

66

Amino Acids

7.58

Weight (kDa)

9.6

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	71, 85
BbvI	GCAGC	2 cut(s)	58, 72
BccI	CCATC	1 cut(s)	116
BisI	GCNGC	2 cut(s)	72, 86
BlsI	GCNGC	2 cut(s)	73, 87
BmsI	GCATC	2 cut(s)	72, 97
BseXI	GCAGC	2 cut(s)	58, 72
BstV1I	GCAGC	2 cut(s)	58, 72
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
DraI	TTTAAA	1 cut(s)	66
FaeI	CATG	1 cut(s)	159
FaiI	YATR	5 cut(s)	54, 97, 99, 157, 162
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	72, 86
Fsp4HI	GCNGC	2 cut(s)	72, 86
GluI	GCNGC	2 cut(s)	72, 86
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	48, 93
HpyCH4V	TGCA	2 cut(s)	74, 88
Hsp92II	CATG	1 cut(s)	159
Lsp1109I	GCAGC	2 cut(s)	58, 72
LweI	GCATC	2 cut(s)	72, 97
MboII	GAAGA	1 cut(s)	162
MnlI	CCTC	2 cut(s)	42, 119
MseI	TTAA	2 cut(s)	65, 199
NlaIII	CATG	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	73, 87
SaqAI	TTAA	2 cut(s)	65, 199
SatI	GCNGC	2 cut(s)	72, 86
SetI	ASST	3 cut(s)	53, 73, 130
SfaNI	GCATC	2 cut(s)	72, 97
SgeI	CNNG	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	65, 199
Tru9I	TTAA	2 cut(s)	65, 199
TseI	GCWGC	2 cut(s)	71, 85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.