RchiOBHm_Chr3g0495911

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024926
Physical Location & Seq
Reverse (-)
46178497 .. 46179786
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGCTTGGTGAGAGAAAGAATGTTAATCTTCCAGGGGTCGTTGTGGATCTCCCAACCTCAACAGAAAAAGACAAAGAAGATATTATCAATTGGGGGATTCCAAACAAGATTGACATGATTGCTCTGTCTTTTGTTCGAAAAGGTTCAGACCTAGTGGAGGTATGCAAGCTCCTTTGGAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004743 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

61

Amino Acids

6.84

Weight (kDa)

6.14

Isoelectric Point (pI)

15.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 2 - 58 1.6e-17 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024926)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0495911 RchiOBHm_Chr5g0071261
rosa_samantha Rh3AG324900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 46
BspPI GGATC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 155
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 167
CviAII CATG 2 cut(s) 115, 183
CviJI RGCY 1 cut(s) 169
CviKI_1 RGCY 1 cut(s) 169
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 118, 186
FaiI YATR 3 cut(s) 116, 163, 184
FatI CATG 2 cut(s) 114, 182
FspBI CTAG 1 cut(s) 152
Hin1II CATG 2 cut(s) 118, 186
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 165
Hsp92II CATG 2 cut(s) 118, 186
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 18, 45
MaeI CTAG 1 cut(s) 152
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 20, 89
MfeI CAATTG 1 cut(s) 88
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 88
MnlI CCTC 2 cut(s) 67, 151
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 33
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 118, 186
NspV TTCGAA 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 46
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 33
SetI ASST 5 cut(s) 59, 145, 153, 162, 171
SfuI TTCGAA 1 cut(s) 136
SgeI CNNG 7 cut(s) 17, 44, 45, 118, 127, 164, 178
Sse9I AATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 88
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.