RchiOBHm_Chr3g0497341

BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
49244577 .. 49245123
547 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGCTTTGTGGGTTCATCATAGTTTTGATGTTGGATTGCCTCTTGATGCTGCCGCTGTGAGTTTCCCATCCCATCTTTTCTCACCTTATTTCCCCATAATTTTGTGGTTAGAACTTAAGCAAGTTTGTTCTTATTGCGCTAAACATTTTCATGTTATATCCATATGTCCAGAAAATTTAAAAACCTTGGAGCCTGGATTGAGGATTTGCATACTGTTGTGTTATGTGCAGATTATATACAGACCTCTCAAACATTTGAATGGTATTCTCGGTGCCAAGAATTTATTAATGTGCTTGACTGGATATCAAGGACAAGATAGAGATGACATTATGACAATAGTTGGTTTAATAGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGGTATGGTTTCTTCCTTGTGGTCCTTACTAATAATTAAATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT PHD PTCB-BRCT

Protein Analysis

154

Amino Acids

17.42

Weight (kDa)

8.48

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTCB-BRCT PF12738 95 - 140 3.4e-10 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AciI CCGC 1 cut(s) 54
AcsI RAATTY 3 cut(s) 175, 280, 410
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 259, 416
AjnI CCWGG 1 cut(s) 193
Alw21I GWGCWC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 3 cut(s) 175, 280, 410
AseI ATTAAT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 75
AvaII GGWCC 1 cut(s) 438
BanI GGYRCC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 76, 81
BciT130I CCWGG 1 cut(s) 195
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 2 cut(s) 192, 274
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 358
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 192, 274
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 438
CviAII CATG 1 cut(s) 152
CviJI RGCY 2 cut(s) 5, 193
CviKI_1 RGCY 2 cut(s) 5, 193
DdeI CTNAG 1 cut(s) 357
DraI TTTAAA 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 193
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 155
FatI CATG 1 cut(s) 151
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 51, 54
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 51, 54
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 155
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HphI GGTGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 44, 170
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 210, 229
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 155
HspAI GCGC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 180, 183, 207, 285
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 388
MboII GAAGA 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 6 cut(s) 99, 175, 280, 410, 450, 460
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 3 cut(s) 51, 195, 255
MseI TTAA 5 cut(s) 117, 179, 287, 347, 453
MslI CAYNNNNRTG 2 cut(s) 150, 258
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 164
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 2 cut(s) 192, 274
NmuCI GTSAC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 52, 55
PshBI ATTAAT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 192, 274
PspPI GGNCC 1 cut(s) 438
RseI CAYNNNNRTG 2 cut(s) 150, 258
SaqAI TTAA 5 cut(s) 117, 179, 287, 347, 453
SatI GCNGC 2 cut(s) 51, 54
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 358
SetI ASST 5 cut(s) 88, 188, 247, 355, 421
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 150, 258
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 6 cut(s) 99, 175, 280, 410, 450, 460
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 216
TasI AATT 6 cut(s) 99, 175, 280, 410, 450, 460
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 5 cut(s) 117, 179, 287, 347, 453
Tru9I TTAA 5 cut(s) 117, 179, 287, 347, 453
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 5, 140
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 3 cut(s) 175, 280, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.