Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3267383 .. 3268847

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCGGCCGGGACTTGATGGCTTGTGCTCAGAGCGGGTCCGGAAAGACGGCGGCTTTTTGCTTCCCCATTATCAGTGGTGTGTTGACCAAGTGTGTGGAGAGGTCTCAGAGTAATGGTGGTGATGGTTGGACTGTGTTTCCCAGAGCTCTCATTTTGTCTCCGACGAGAGAGTTGACCAGTCAGGTATATTTGTGGAAGCTGGAAAGTTTGCTTATCAGAGTGGAGCAAAAATGGCTGTTGTTTATGGTGGAGCGCCGATGGGTCAGCAGCTTCGTGATTTGGAGAGAGGTGTTGATATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

101

Amino Acids

11.45

Weight (kDa)

9.35

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 64	5.7e-12	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	2 cut(s)	36, 53
AcoI	YGGCCR	2 cut(s)	3, 7
AluBI	AGCT	3 cut(s)	149, 202, 273
AluI	AGCT	3 cut(s)	149, 202, 273
Alw21I	GWGCWC	2 cut(s)	31, 151
Alw26I	GTCTC	2 cut(s)	111, 165
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	2 cut(s)	3, 7
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	2 cut(s)	31, 151
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	3 cut(s)	13, 119, 255
BceAI	ACGGC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	111, 165
BfaI	CTAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	2 cut(s)	54, 271
BlsI	GCNGC	2 cut(s)	55, 272
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	44, 122
BseNI	ACTGG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	5, 9
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	31, 151
BsiSI	CCGG	3 cut(s)	6, 10, 42
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	111, 165
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	5, 9
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	31, 151
Bsp13I	TCCGGA	1 cut(s)	41
BspACI	CCGC	2 cut(s)	36, 53
BspANI	GGCC	2 cut(s)	5, 9
BspCNI	CTCAG	2 cut(s)	43, 121
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	30, 108
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	111, 165
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	5, 9
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	39
CviJI	RGCY	8 cut(s)	5, 9, 23, 56, 149, 202, 238, 273
CviKI_1	RGCY	8 cut(s)	5, 9, 23, 56, 149, 202, 238, 273
DdeI	CTNAG	2 cut(s)	30, 108
EaeI	YGGCCR	2 cut(s)	3, 7
EagI	CGGCCG	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	2 cut(s)	190, 248
FaqI	GGGAC	1 cut(s)	26
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	54, 271
FriOI	GRGCYC	1 cut(s)	151
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	54, 271
FspBI	CTAG	1 cut(s)	304
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	54, 271
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	5, 9
HapII	CCGG	3 cut(s)	6, 10, 42
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	2 cut(s)	87, 177
HindII	GTYRAC	2 cut(s)	87, 177
HpaII	CCGG	3 cut(s)	6, 10, 42
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	87, 177
Hpy188I	TCNGA	4 cut(s)	33, 111, 165, 221
Hpy188III	TCNNGA	2 cut(s)	42, 277
Hpy8I	GTNNAC	2 cut(s)	87, 177
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	30, 108
HspAI	GCGC	1 cut(s)	256
Kpn2I	TCCGGA	1 cut(s)	41
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	226, 253
LpnPI	CCDG	7 cut(s)	19, 23, 55, 157, 170, 188, 193
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	304
MbiI	CCGCTC	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	31, 151
MmeI	TCCRAC	2 cut(s)	110, 188
MnlI	CCTC	2 cut(s)	96, 283
MroI	TCCGGA	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	5
MspI	CCGG	3 cut(s)	6, 10, 42
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	235
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	55, 272
Psp124BI	GAGCTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
RigI	GGCCGGCC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	151
SatI	GCNGC	2 cut(s)	54, 271
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	31, 151
SetI	ASST	6 cut(s)	107, 151, 189, 204, 275, 294
SinI	GGWCC	1 cut(s)	39
SsiI	CCGC	2 cut(s)	36, 53
SspMI	CTAG	1 cut(s)	304
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	270
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	39
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.