Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3773037 .. 3773637

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTCCTGCAGATGCAGTCCCTTGGTGTCGAGCCAAACCTGGTCACTTGGACTACTATGATCTCTGGTCTGGCGGAGAATGGGTTTGGCCATGAAGCAATTCAGGCCTTCCATCAAATGCAAGAAGCGGGAATCAAACCCAATGTTGTGAGTATCATTTGTGTACTTAAGGCTTGCATAGAAATGGCATCATTACAGAATGGAAGAGTTATACATGGGTATTTGATTAGGCATTACCTCTACCTTTCGATCCCAATTGCAACATCTTTAGTGGATATGTATGCTAAATGTGGTAATGTAGAAGAAGCAAAGAGAGTGTTTGATATGGTGTCAGACAAGGAGTTACCTATCTATAATGCAATGATCTCCAGTTACGCATTACATGGTCAAGCTGTGGAAGCTCTTGCACTATACCGGAGTTTAAAGGAAGAAGGCTTACAACCCGACAGTGTAACCTTTACTAATGCCTTATATGCATGTAGCCATGCCAGTCTGGTGACTGAAGGTTTGGAGCTTTTGGATGACTTGTTAATTGTTATCCAATCAAACTATAAATCCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

20.85

Weight (kDa)

5.28

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	4 - 59	2.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	9 - 41	8.2e-08	PPR repeat
PPR_2	PF13041	12 - 59	1.4e-11	PPR repeat family
PPR	PF01535	15 - 45	5.5e-08	PPR repeat
PPR_2	PF13041	117 - 161	5.1e-09	PPR repeat family
PPR	PF01535	117 - 146	3.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 128
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	165
AflII	CTTAAG	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	392, 401, 514
AluI	AGCT	3 cut(s)	392, 401, 514
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	2 cut(s)	88, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	3, 197
BpmI	CTGGAG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse1I	ACTGG	2 cut(s)	369, 489
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	369, 489
BshFI	GGCC	2 cut(s)	90, 107
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	90, 107
Bsp143I	GATC	3 cut(s)	60, 249, 363
BspACI	CCGC	2 cut(s)	74, 128
BspANI	GGCC	2 cut(s)	90, 107
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	369, 489
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	60, 249, 363
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	199
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	63, 252, 366
BstMBI	GATC	3 cut(s)	60, 249, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 398, 473
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	90, 107
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	5 cut(s)	92, 215, 383, 477, 485
CviJI	RGCY	9 cut(s)	34, 90, 107, 173, 392, 401, 435, 483, 514
CviKI_1	RGCY	9 cut(s)	34, 90, 107, 173, 392, 401, 435, 483, 514
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	3 cut(s)	62, 251, 365
DpnII	GATC	3 cut(s)	60, 249, 363
DraI	TTTAAA	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	5 cut(s)	95, 218, 386, 480, 488
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	5 cut(s)	91, 214, 382, 476, 484
FauI	CCCGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	90, 107
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	5 cut(s)	95, 218, 386, 480, 488
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	118, 425, 497
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	8 cut(s)	10, 16, 121, 177, 260, 359, 407, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 398, 473
Hsp92II	CATG	5 cut(s)	95, 218, 386, 480, 488
Kzo9I	GATC	3 cut(s)	60, 249, 363
LmnI	GCTCC	1 cut(s)	511
LweI	GCATC	2 cut(s)	3, 197
MabI	ACCWGGT	1 cut(s)	39
MaeIII	GTNAC	5 cut(s)	43, 342, 371, 451, 496
MalI	GATC	3 cut(s)	62, 251, 365
MboI	GATC	3 cut(s)	60, 249, 363
MboII	GAAGA	3 cut(s)	216, 314, 440
MfeI	CAATTG	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	3 cut(s)	99, 255, 531
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	3 cut(s)	168, 422, 530
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	104, 398, 473
NdeII	GATC	3 cut(s)	60, 249, 363
NlaIII	CATG	5 cut(s)	95, 218, 386, 480, 488
NmuCI	GTSAC	2 cut(s)	43, 496
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	168, 422, 530
Sau3AI	GATC	3 cut(s)	60, 249, 363
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	9 cut(s)	42, 240, 246, 349, 394, 403, 458, 508, 516
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	3, 197
SfcI	CTRYAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	99, 255, 531
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	74, 128
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	2 cut(s)	30, 248
TasI	AATT	3 cut(s)	99, 255, 531
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	168, 422, 530
Tru9I	TTAA	3 cut(s)	168, 422, 530
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	43, 496
Tsp45I	GTSAC	2 cut(s)	43, 496
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.