RchiOBHm_Chr2g0092891

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
6279222 .. 6281183
1962 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGTTCTTTCAAGTTTTGATGTTATCCTTTACGGGTTTTCTGTTTTGGAAGGCTGGGGAGTTTGAGGTAGTGCCTTGTGGCGATGCAGATTCTTCTGCTGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGAGCATTGGATTGCTGTCTTACACATTTTTGAAGAGCACAGGAAAGGAAGATTTTGTTGTTCCCATGGTAATGACATTTATATTGTCTTTGTCATCCTTGTCTACTTTATGCATATTGTCATCTAGTGTTTTTATCCAGTTATTTCATTATTGTCTGTTGAAACTTAAAGATTAG

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

4.57

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 263
AciI CCGC 1 cut(s) 107
AgsI TTSAA 3 cut(s) 11, 193, 322
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 85
BfaI CTAG 1 cut(s) 285
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmsI GCATC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 148, 298
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 148, 298
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 188
BsrI ACTGG 2 cut(s) 148, 298
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 141
CviAII CATG 1 cut(s) 226
CviJI RGCY 2 cut(s) 53, 112
CviKI_1 RGCY 2 cut(s) 53, 112
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 156, 227, 242, 271, 275
FatI CATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 285
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 86, 125, 141, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 39, 129, 186, 311
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 285
MboII GAAGA 3 cut(s) 84, 205, 221
MhlI GDGCHC 1 cut(s) 200
MnlI CCTC 2 cut(s) 58, 127
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 2 cut(s) 159, 327
MslI CAYNNNNRTG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 225
NlaIII CATG 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 159, 327
SatI GCNGC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 200
SetI ASST 3 cut(s) 69, 114, 138
SfaNI GCATC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 225
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 159, 327
Tru9I TTAA 2 cut(s) 159, 327
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.