RchiOBHm_Chr2g0093291

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
6591592 .. 6591903
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGAATTGACATCGATCTCTATACCAACCTATATTAACATTCAACATTCTTTTATAGGCACTGGTGACGACTGTATTGACTGTATTGCAATCAATATTGGCTCATTTCATATGAACATTACTGATGTTTTGTGTGGTCCAGGCCATGGTATAAGTGTTGGAAGTCCTAGTGAGCATGCTTCTTGTAGCATAGTGAAAGATGTGCAAGTGACAAAGTGCACCTTCAAGGAAACACAAAATGGAGCAAGAATCAAGACATATGGCAAAGCGGGTCAGGGCATGCTAGGCACATCATTTTTGAGAATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

103

Amino Acids

10.94

Weight (kDa)

6.38

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 9 - 90 2.2e-22 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 44, 226
AjnI CCWGG 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 217
AoxI GGCC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 141
BfaI CTAG 2 cut(s) 168, 284
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 221
BshFI GGCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 146
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 14
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 74, 83
BstC8I GCNNGC 2 cut(s) 177, 281
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 179, 283
BstSCI CCNGG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 177, 281
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 3 cut(s) 146, 176, 280
CviJI RGCY 2 cut(s) 102, 144
CviKI_1 RGCY 2 cut(s) 102, 144
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 149, 179, 283
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FatI CATG 3 cut(s) 145, 175, 279
FauI CCCGC 1 cut(s) 262
FauNDI CATATG 2 cut(s) 111, 259
FspBI CTAG 2 cut(s) 168, 284
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 3 cut(s) 149, 179, 283
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 74, 83
HpyCH4V TGCA 3 cut(s) 89, 205, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
Hsp92II CATG 3 cut(s) 149, 179, 283
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 48, 126, 153, 260
MaeI CTAG 2 cut(s) 168, 284
MaeIII GTNAC 2 cut(s) 65, 208
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 139
MseI TTAA 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 145
NdeI CATATG 2 cut(s) 111, 259
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 149, 179, 283
NmuCI GTSAC 2 cut(s) 65, 208
NspI RCATGY 2 cut(s) 179, 283
PaeI GCATGC 2 cut(s) 179, 283
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspPI GGNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 221
SetI ASST 2 cut(s) 32, 224
SinI GGWCC 1 cut(s) 137
SphI GCATGC 2 cut(s) 179, 283
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 97
SspMI CTAG 2 cut(s) 168, 284
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 74, 83
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 2 cut(s) 65, 208
Tsp45I GTSAC 2 cut(s) 65, 208
TspDTI ATGAA 2 cut(s) 98, 128
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 146
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 2 cut(s) 179, 283
XspI CTAG 2 cut(s) 168, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.