Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6857945 .. 6858392

Gene Structure 448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGGGAACCGAGCGAAAATCTGCAGTTAAATCTGAAGAATTACGAAAGCTCACAGCTTTTCACGAGAGTTGCCATGCACTTGTAGCCATTCATGCCGATGGTGCACTTCCGACTCACAAGGCTACGATTGCATCACGAGGAATGTCTCTCGGCATGGTTATAAAGAACAGAGGACGAGATTGGAATAATCTGTTTGAATTAGATAATTGCTTTACAGTACAAAGCTTAGATTTATACAAGGACTATAGTCTATCTAAGTTAAGAACTAATTGTGTGATTTACAGAATATATTGGATTGAAAGCAGATACAAGAAACAGTTAACAATAAGTAAATCAATATTCTTCGATTTAGGATCTGCCATTGATTCTCAGAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

127

Amino Acids

14.5

Weight (kDa)

9.22

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	10 - 55	1.5e-10	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	200, 302
AluBI	AGCT	3 cut(s)	52, 59, 228
AluI	AGCT	3 cut(s)	52, 59, 228
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	109
BauI	CACGAG	2 cut(s)	65, 138
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	24, 247
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	364
BssMI	GATC	1 cut(s)	356
BssSI	CACGAG	2 cut(s)	65, 138
Bst2BI	CACGAG	2 cut(s)	65, 138
Bst4CI	ACNGT	2 cut(s)	220, 321
BstDEI	CTNAG	3 cut(s)	229, 258, 372
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 131
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	24, 247
BstSLI	GKGCMC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	77, 95, 157
CviJI	RGCY	5 cut(s)	52, 59, 89, 125, 228
CviKI_1	RGCY	5 cut(s)	52, 59, 89, 125, 228
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	229, 258, 372
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	57
FaeI	CATG	3 cut(s)	80, 98, 160
FaiI	YATR	7 cut(s)	78, 96, 158, 164, 238, 249, 292
FatI	CATG	3 cut(s)	76, 94, 156
Hin1II	CATG	3 cut(s)	80, 98, 160
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	2 cut(s)	115, 368
HpaI	GTTAAC	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	107, 324
Hpy188I	TCNGA	3 cut(s)	37, 114, 375
Hpy188III	TCNNGA	2 cut(s)	65, 138
Hpy8I	GTNNAC	2 cut(s)	107, 324
HpyCH4III	ACNGT	2 cut(s)	220, 321
HpyCH4V	TGCA	4 cut(s)	26, 80, 107, 134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 131
HpyF3I	CTNAG	3 cut(s)	229, 258, 372
Hsp92II	CATG	3 cut(s)	80, 98, 160
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	356
LweI	GCATC	1 cut(s)	143
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	2 cut(s)	50, 337
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	5 cut(s)	41, 200, 208, 271, 379
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	134, 167
MseI	TTAA	3 cut(s)	30, 263, 323
MslI	CAYNNNNRTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 131
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	3 cut(s)	80, 98, 160
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	368
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshAI	GACNNNNGTC	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	30, 263, 323
Sau3AI	GATC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	3 cut(s)	54, 61, 230
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	2 cut(s)	24, 247
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	5 cut(s)	41, 200, 208, 271, 379
SspI	AATATT	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	220, 321
TaqI	TCGA	1 cut(s)	348
TasI	AATT	5 cut(s)	41, 200, 208, 271, 379
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	30, 263, 323
Tru9I	TTAA	3 cut(s)	30, 263, 323
TspDTI	ATGAA	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.