RchiOBHm_Chr2g0093991

Protein of unknown function (DUF3531)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
7065339 .. 7066972
1634 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGTCAGGCCCAAGACGAGTGTATTGGTTGCTAAAGCGGGTCGGGGTCAAAAGTTGAAGTCCCAGGAAAAGAGTGGAGGAGAAGATGGAGGCTTTGGTGAAGATGGGTTTTCGAGTGGGAGTGGGTTTGTGGGGAGAGGAGAAGGGAAGGAGTTCGATCGAGACCCTGAGTTTGCTGAAATAATGGGTGCTTGTCTTGATGACCCACAAAAGGCTAGGTCCAAGATGGAGGAGAGGTTGAGGAAGAAAAGGAACAAGATATTGCTTACAAAATCGGGGGTGGATATCGGTACTAAAGAGCCACTGATACTGGATGTTCTGATAAATGCATTGACTCAGAGAAGCTCCGAGTTTTTTTTTTTTTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

8.73

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 9, 219
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 219
BccI CCATC 3 cut(s) 80, 98, 220
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 9, 219
BmrFI CCNGG 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 159, 350
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 93, 153, 245
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 160, 349
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 168, 336
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 157
BstMCI CGRYCG 1 cut(s) 160
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 9, 219
Csp6I GTAC 1 cut(s) 291
CviJI RGCY 5 cut(s) 10, 93, 215, 301, 345
CviKI_1 RGCY 5 cut(s) 10, 93, 215, 301, 345
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 168, 336
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 63
EcoRV GATATC 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 331
FaqI GGGAC 1 cut(s) 46
FauI CCCGC 1 cut(s) 31
FokI GGATG 1 cut(s) 326
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 10
HinfI GANTC 1 cut(s) 334
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 321, 339, 349
Hpy188III TCNNGA 2 cut(s) 161, 197
HpyAV CCTTC 2 cut(s) 137, 142
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 168, 336
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 4 cut(s) 50, 77, 180, 296
MaeI CTAG 1 cut(s) 216
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 95, 113, 256
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 6 cut(s) 71, 83, 131, 223, 228, 234
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
NdeII GATC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 152
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 2 cut(s) 9, 219
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 370
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 9, 219
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 65
SetI ASST 3 cut(s) 221, 239, 347
SinI GGWCC 1 cut(s) 219
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 63
TaqI TCGA 3 cut(s) 113, 156, 160
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 1 cut(s) 309
TspRI CASTG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.