RchiOBHm_Chr2g0094731

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
7645041 .. 7648000
2960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
ATGGCAGTACTCGACTGGATTGCACTCATTCTGTGTGTTTTAGCAAGCTTTGACAACCATGTAGGCCGTGTGGGAGCTGTAGACATAGGTGTTTGCCATGGGAGGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGAGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACTGATTGGATGTCAAACTTCAAAGGAGATGGTGGATACAATGGCAATGGCGGCAGAAATTTCAACAGCAAATTAAGTTCTCAGTTCAACATCAATCAATCCTACACCAATAGTAGTGATGGGTTTTCCAACAGAGGTTTTAATAAGAACAAGAGCAGAAATTGTAACAACAATGGAGACAATGATGGCTTTACTTCTTGCAATGATGGATATATACAGCAAGGTGATGTTTATCCTCACTTTCCTAATAACAACTTTGATGGAAACAAAGGTAAACCTCGACCGAGAATTACCAACACTAGTGGTCAAACTTATAGCAGCATTGTTTGTCAAATTTGTGAGAAACAAGGTCATGGGGCATACAACTGTTATTATAGGAATTCTCAACAACAGCAAGAGGCATCAAGTTCTTTGGTTGCTAGTAGTGTACTATCCGGCATTCTTGAGTTTTTAGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAAGTCAAACCCTGGCAGTGTTCGCTTAGACTATGCTCAATTCACTGCAACAGACACAGTGGTGCAAGACGGAGCATACAGCCACTACTACAGAAATTGA

Protein Analysis

278

Amino Acids

30.48

Weight (kDa)

7.02

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 82 6e-10 Glycosyl hydrolases family 17
Glyco_hydro_17 PF00332 216 - 272 2.9e-08 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AciI CCGC 1 cut(s) 285
AcsI RAATTY 3 cut(s) 292, 567, 613
AfaI GTAC 2 cut(s) 9, 663
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 3 cut(s) 256, 298, 322
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 748
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 3 cut(s) 48, 77, 202
AluI AGCT 3 cut(s) 48, 77, 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 125, 552
ApoI RAATTY 3 cut(s) 292, 567, 613
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 183
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 137, 564
BccI CCATC 5 cut(s) 257, 347, 413, 434, 488
BceAI ACGGC 2 cut(s) 51, 175
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 2 cut(s) 263, 732
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 534, 654
BfmI CTRYAG 3 cut(s) 78, 123, 826
BfuI GTATCC 2 cut(s) 263, 732
BisI GCNGC 3 cut(s) 126, 286, 553
BlsI GCNGC 3 cut(s) 127, 287, 554
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 3 cut(s) 196, 644, 698
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 698
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 97, 748
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 3 cut(s) 162, 286, 442
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 97, 748
BseGI GGATG 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 3 cut(s) 162, 286, 442
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 137, 564
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 669
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 3 cut(s) 162, 286, 442
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 97, 748
BssMI GATC 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 602, 796
Bst6I CTCTTC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 315, 763
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 1 cut(s) 714
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 711
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 2 cut(s) 285, 759
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 3 cut(s) 78, 123, 826
BstV1I GCAGC 2 cut(s) 137, 564
BsuI GTATCC 2 cut(s) 263, 732
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 249
BtsI GCAGTG 2 cut(s) 760, 780
BtsIMutI CAGTG 4 cut(s) 234, 760, 780, 801
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 8, 662
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 4 cut(s) 59, 98, 194, 587
CviJI RGCY 7 cut(s) 48, 66, 77, 178, 202, 423, 819
CviKI_1 RGCY 7 cut(s) 48, 66, 77, 178, 202, 423, 819
CviQI GTAC 2 cut(s) 8, 662
DdeI CTNAG 2 cut(s) 315, 763
DpnI GATC 1 cut(s) 713
DpnII GATC 1 cut(s) 711
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 4 cut(s) 62, 101, 197, 590
FatI CATG 4 cut(s) 58, 97, 193, 586
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 126, 286, 553
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 126, 286, 553
FspBI CTAG 2 cut(s) 534, 654
GluI GCNGC 3 cut(s) 126, 286, 553
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 669
Hin1II CATG 4 cut(s) 62, 101, 197, 590
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 2 cut(s) 225, 698
HpaII CCGG 1 cut(s) 669
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 3 cut(s) 82, 509, 662
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 3 cut(s) 82, 509, 662
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 602, 796
HpyCH4V TGCA 7 cut(s) 23, 125, 167, 197, 435, 785, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 759
HpyF3I CTNAG 2 cut(s) 315, 763
Hsp92II CATG 4 cut(s) 62, 101, 197, 590
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 1 cut(s) 711
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 74, 809
LpnPI CCDG 6 cut(s) 92, 135, 224, 682, 735, 762
Lsp1109I GCAGC 2 cut(s) 137, 564
LweI GCATC 3 cut(s) 196, 644, 698
MaeI CTAG 2 cut(s) 534, 654
MaeIII GTNAC 2 cut(s) 232, 398
MalI GATC 1 cut(s) 713
MboI GATC 1 cut(s) 711
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 9 cut(s) 171, 292, 305, 394, 522, 567, 613, 776, 832
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 5 cut(s) 96, 362, 480, 522, 625
MseI TTAA 2 cut(s) 308, 375
MslI CAYNNNNRTG 1 cut(s) 797
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 2 cut(s) 285, 759
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 711
NlaIII CATG 4 cut(s) 62, 101, 197, 590
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 797
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 225, 698
PkrI GCNGC 3 cut(s) 127, 287, 554
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 2 cut(s) 9, 663
RsaNI GTAC 2 cut(s) 8, 662
RseI CAYNNNNRTG 1 cut(s) 797
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 308, 375
SatI GCNGC 3 cut(s) 126, 286, 553
Sau3AI GATC 1 cut(s) 711
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 3 cut(s) 196, 644, 698
SfcI CTRYAG 3 cut(s) 78, 123, 826
SfuI TTCGAA 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 9 cut(s) 171, 292, 305, 394, 522, 567, 613, 776, 832
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 534, 654
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 602, 796
TaqI TCGA 4 cut(s) 12, 183, 204, 514
TaqII GACCGA 1 cut(s) 532
TasI AATT 9 cut(s) 171, 292, 305, 394, 522, 567, 613, 776, 832
TatI WGTACW 2 cut(s) 7, 661
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 2 cut(s) 225, 698
Tru1I TTAA 2 cut(s) 308, 375
Tru9I TTAA 2 cut(s) 308, 375
TscAI CASTG 4 cut(s) 241, 760, 787, 801
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 125, 552
Tsp45I GTSAC 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 4 cut(s) 241, 760, 787, 801
XapI RAATTY 3 cut(s) 292, 567, 613
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 2 cut(s) 534, 654
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.