Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029826

Physical Location & Seq

Genomic Coordinates Reverse (-)

7828496 .. 7828669

Gene Structure 174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAAAGAGACAATGAGGAAACACCCTGTTGCTGTAATGCTCGCACCACGTCTGGCTCTTGAAGATTGCAATGTGGAAGGTTACGATATTCGTAAGGGGACAAGAGTGTTCATAAACACATGGAGCATAGGGAGAAACTCATCAGTGTGGGAAGCACCAGAGGAGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

57

Amino Acids

6.59

Weight (kDa)

6.55

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 57	3.3e-19	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029826)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094961
rosa_samantha	Rh2CG098800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	2
BmgBI	CACGTC	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	2
BtrI	CACGTC	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	42
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
FaeI	CATG	1 cut(s)	123
FaiI	YATR	3 cut(s)	113, 121, 128
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	119
Hin1II	CATG	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	2 cut(s)	38, 39
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	80
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	2 cut(s)	9, 154
MseI	TTAA	2 cut(s)	168, 172
MslI	CAYNNNNRTG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	123
PacI	TTAATTAA	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	168, 172
SetI	ASST	2 cut(s)	52, 82
SgeI	CNNG	8 cut(s)	38, 53, 60, 65, 71, 114, 132, 170
SmiMI	CAYNNNNRTG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	52
TasI	AATT	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	168, 172
Tru9I	TTAA	2 cut(s)	168, 172
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	17, 100
TspRI	CASTG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.