Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7904269 .. 7904881

Gene Structure 613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGCTTTTAAGAAAAAGTTCGACAGATTTCATGACCATGTTTTCGGTGAACACAGGTCAAACAAGGAAGGTGTAAAGGAGTTTGTGCCAAAGGACATAGTAGATGATTTAATAGCGGGAGGCACAGATACCTCAGCGACCACTGTGGACTGGGCAATGTCCGAACTGATGAAACAACCACACCTCATCCAAAAAGCGATCGAAGAACTTGACAGAGTGATTGGGAGAGAGACATGGGTGGAAGACAAAGACATAGCACAACTTCCTTGCATAGATGCGATCATGAAAGAGACAATGAGGAAACACCCTGTTGCCTGTAATGCTCGCACCACATCTGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

6.19

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 107	2.3e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	227, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	227, 287
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	227, 287
Bsp143I	GATC	2 cut(s)	201, 282
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	149
BspHI	TCATGA	2 cut(s)	34, 285
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	201, 282
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	204, 285
BstMAI	GTCTC	2 cut(s)	227, 287
BstMBI	GATC	2 cut(s)	201, 282
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	2 cut(s)	34, 285
CviAII	CATG	4 cut(s)	35, 41, 237, 286
CviJI	RGCY	2 cut(s)	8, 342
CviKI_1	RGCY	2 cut(s)	8, 342
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	2 cut(s)	203, 284
DpnII	GATC	2 cut(s)	201, 282
FaeI	CATG	4 cut(s)	38, 44, 240, 289
FaiI	YATR	7 cut(s)	36, 42, 101, 238, 257, 275, 287
FatI	CATG	4 cut(s)	34, 40, 236, 285
FauI	CCCGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	176
Hin1II	CATG	4 cut(s)	38, 44, 240, 289
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	53, 151
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	35, 286, 345
Hpy8I	GTNNAC	2 cut(s)	53, 151
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	38, 44, 240, 289
Kzo9I	GATC	2 cut(s)	201, 282
LpnPI	CCDG	5 cut(s)	43, 139, 324, 324, 331
LweI	GCATC	1 cut(s)	268
MalI	GATC	2 cut(s)	203, 284
MboI	GATC	2 cut(s)	201, 282
MboII	GAAGA	2 cut(s)	218, 257
MnlI	CCTC	4 cut(s)	116, 145, 197, 294
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	12, 113
MslI	CAYNNNNRTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	201, 282
NlaIII	CATG	4 cut(s)	38, 44, 240, 289
PagI	TCATGA	2 cut(s)	34, 285
PdmI	GAANNNNTTC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	204
PvuI	CGATCG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	12, 113
Sau3AI	GATC	2 cut(s)	201, 282
SetI	ASST	4 cut(s)	62, 76, 137, 189
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	39
SsiI	CCGC	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	24, 204
Tru1I	TTAA	2 cut(s)	12, 113
Tru9I	TTAA	2 cut(s)	12, 113
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	17, 23, 188, 302
TspRI	CASTG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.