RchiOBHm_Chr2g0095091

Tubulin--tyrosine ligase-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
7966905 .. 7967141
237 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGTGGATCTTAAAAGTTTGGAACATGGCACGAACTATTGATACAACTGTCACTGATAATTTATATGCTATTATTCGGCTCATGGAGACTGGACCAAAGATATGTCAGAAGTATATTGAGCACCCCGCCTTGTTCAAAGTGAGAAAATTTGGTATCCGCTACATAGTTTTACGACAGAGTTTGAACCCTACGAAAATATTTCTTTCTGTTTGTGGCAAGATCCTTTGGTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

9.3

Weight (kDa)

10.02

Isoelectric Point (pI)

23.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TTL PF03133 1 - 68 5.9e-17 Tubulin-tyrosine ligase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 157
AclWI GGATC 2 cut(s) 14, 214
AcsI RAATTY 1 cut(s) 146
AgsI TTSAA 2 cut(s) 136, 184
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 14, 214
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 92
AvaII GGWCC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
Bbv12I GWGCWC 1 cut(s) 123
BciVI GTATCC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 80
BfuI GTATCC 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 6, 219
BspACI CCGC 2 cut(s) 126, 157
BspPI GGATC 2 cut(s) 14, 214
BsrI ACTGG 1 cut(s) 94
BssMI GATC 2 cut(s) 6, 219
Bst4CI ACNGT 1 cut(s) 49
BstKTI GATC 2 cut(s) 9, 222
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 6, 219
BstX2I RGATCY 2 cut(s) 6, 219
BstYI RGATCY 2 cut(s) 6, 219
BsuI GTATCC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 2 cut(s) 25, 82
CviJI RGCY 1 cut(s) 79
CviKI_1 RGCY 1 cut(s) 79
DpnI GATC 2 cut(s) 8, 221
DpnII GATC 2 cut(s) 6, 219
Eco47I GGWCC 1 cut(s) 92
FaeI CATG 2 cut(s) 28, 85
FaiI YATR 7 cut(s) 26, 64, 66, 83, 103, 114, 164
FatI CATG 2 cut(s) 24, 81
FauI CCCGC 1 cut(s) 133
Hin1II CATG 2 cut(s) 28, 85
Hpy188I TCNGA 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 28, 85
Kzo9I GATC 2 cut(s) 6, 219
LpnPI CCDG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 8, 221
MboI GATC 2 cut(s) 6, 219
MflI RGATCY 2 cut(s) 6, 219
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 2 cut(s) 58, 146
MseI TTAA 1 cut(s) 11
NdeII GATC 2 cut(s) 6, 219
NlaIII CATG 2 cut(s) 28, 85
NmuCI GTSAC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 25, 57
PsuI RGATCY 2 cut(s) 6, 219
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 2 cut(s) 6, 219
Sau96I GGNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 123
SgeI CNNG 7 cut(s) 37, 42, 94, 102, 137, 142, 229
SinI GGWCC 1 cut(s) 92
Sse9I AATT 2 cut(s) 58, 146
SsiI CCGC 2 cut(s) 126, 157
SspI AATATT 1 cut(s) 198
TaaI ACNGT 1 cut(s) 49
TasI AATT 2 cut(s) 58, 146
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.