Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8622267 .. 8627364

Gene Structure 5098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATTTTATTGGATGAACTTGTATTCTTAGCGCTTGTTCTTTCATATGCACCTAAATCTGAGCATGCTTGGAGCCACAGGCGATGGGTCATCAAGTTAATTGTTGGAAAGTGTTCAACTCTGCAAGAGATCGTCACCAAAGAGTTTGAGCTGGTGGAGAAAATAGCCGAGGTTTATATTCAGTTCAGGAATTGCGTACTTTTAATTTGCAAAGAGGTCAAAAATGTATTACCGTGCATGGTATCATCGTTGCTGATTGGTGACCTACATGACAACGTACAGAGATGGTTAGACTTATTTCCTCAATCCTCTTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

115

Amino Acids

13.31

Weight (kDa)

6.81

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	13 - 41	9.3e-08	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	225, 306
AfeI	AGCGCT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	2 cut(s)	25, 178
AluI	AGCT	2 cut(s)	25, 178
Alw21I	GWGCWC	1 cut(s)	27
Aor51HI	AGCGCT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	154, 299
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	2 cut(s)	105, 306
BfoI	RGCGCY	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	55, 87
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	224, 305
CviAII	CATG	3 cut(s)	92, 265, 296
CviJI	RGCY	4 cut(s)	25, 102, 178, 194
CviKI_1	RGCY	4 cut(s)	25, 102, 178, 194
CviQI	GTAC	2 cut(s)	224, 305
DdeI	CTNAG	2 cut(s)	55, 87
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	3 cut(s)	95, 268, 299
FaiI	YATR	6 cut(s)	73, 75, 93, 204, 266, 297
FatI	CATG	3 cut(s)	91, 264, 295
FauNDI	CATATG	1 cut(s)	73
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	62
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	95, 268, 299
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	154, 299
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	77, 151, 237, 264
HpyF3I	CTNAG	2 cut(s)	55, 87
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	95, 268, 299
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	91, 164, 199
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	160, 287
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	30, 126, 217, 231
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	190, 235, 339, 346
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	4 cut(s)	11, 125, 230, 346
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	3 cut(s)	95, 268, 299
NlaIV	GGNNCC	1 cut(s)	101
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	160, 287
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	27
PspEI	GGTNACC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	225, 306
RsaNI	GTAC	2 cut(s)	224, 305
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	11, 125, 230, 346
Sau3AI	GATC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 82, 180, 201, 246, 294, 306
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	4 cut(s)	30, 126, 217, 231
SstI	GAGCTC	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	306
TasI	AATT	4 cut(s)	30, 126, 217, 231
Tru1I	TTAA	4 cut(s)	11, 125, 230, 346
Tru9I	TTAA	4 cut(s)	11, 125, 230, 346
TseFI	GTSAC	2 cut(s)	160, 287
Tsp45I	GTSAC	2 cut(s)	160, 287
TspDTI	ATGAA	2 cut(s)	57, 60
XceI	RCATGY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.