Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9026976 .. 9028486

Gene Structure 1511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATTCGTTCACATGTACTTGCAATTCTTAAAGGTGCTTCTTCTCAGGTACAGGCAGCTATCGGAAGCAGTGGTGGCAGCAAAGCTTCTGTTTCTGAGGGTGTAGAAGCATCTGTTATATATGTCCGTTTCAAGGCAGCAGCAAGTGAGCTTAAACCAGTGCTGGAGGAAATTGAAAGCAGAGCATCAAGGAAAGAATATACTCAGATCCTTGCAGAATGTCACAAGCTATACTGCGAACAACCCCTTTCCTTGGTAAGAGGTATAGTACATCAAAGAATATCTGAATTCGCCAAGAAAGAGGCATTGCCATCATTGACTAGATCTGGATGTGCATATCTAATGCAGGTCTGTCAGCTTGAGCACCAACTTTTTGACCACTTTTTCCCATCTTCCGCAGAGGACTTTTCAAGTTTGGCTCCATTGATAGATCCTCTGTGGGTCTCCAATCCTTTTTCACTTTTCGTTCTCTTGTCTATTGTTTTGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006486 GO:0006807 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008152 GO:0008565 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017119 GO:0019538 GO:0031090 GO:0031647 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0050821 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070085 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0099023 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec34

Protein Analysis

164

Amino Acids

17.98

Weight (kDa)

6.51

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG3_C	PF20671	38 - 146	2.4e-27	Conserved oligomeric Golgi complex subunit 3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	202, 425
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	3 cut(s)	18, 51, 270
AfiI	CCNNNNNNNGG	2 cut(s)	133, 253
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	133, 176, 411
AluBI	AGCT	5 cut(s)	59, 86, 151, 229, 358
AluI	AGCT	5 cut(s)	59, 86, 151, 229, 358
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	202, 425
ApeKI	GCWGC	4 cut(s)	56, 78, 137, 140
ApoI	RAATTY	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	4 cut(s)	68, 90, 149, 152
BccI	CCATC	2 cut(s)	319, 397
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	4 cut(s)	57, 79, 138, 141
BlsI	GCNGC	4 cut(s)	58, 80, 139, 142
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	2 cut(s)	119, 194
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 253
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	133, 253
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	3 cut(s)	59, 87, 218
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	68, 90, 149, 152
BsiHKAI	GWGCWC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	133, 253
BsmAI	GTCTC	1 cut(s)	448
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	207, 323, 430
BspACI	CCGC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	58, 88, 217
BspLI	GGNNCC	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	202, 425
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	207, 323, 430
BssT1I	CCWWGG	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	45, 96, 204
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	3 cut(s)	210, 326, 433
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	207, 323, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	68, 90, 149, 152
BstX2I	RGATCY	3 cut(s)	207, 323, 430
BstYI	RGATCY	3 cut(s)	207, 323, 430
BtsCI	GGATG	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 165
BveI	ACCTGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	17, 50, 269
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	6 cut(s)	59, 86, 151, 229, 358, 419
CviKI_1	RGCY	6 cut(s)	59, 86, 151, 229, 358, 419
CviQI	GTAC	3 cut(s)	17, 50, 269
DdeI	CTNAG	3 cut(s)	45, 96, 204
DpnI	GATC	3 cut(s)	209, 325, 432
DpnII	GATC	3 cut(s)	207, 323, 430
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	17
FaiI	YATR	8 cut(s)	15, 119, 121, 123, 201, 232, 266, 337
FatI	CATG	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	57, 79, 138, 141
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	57, 79, 138, 141
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	4 cut(s)	57, 79, 138, 141
GsuI	CTGGAG	1 cut(s)	185
Hin1II	CATG	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	4 cut(s)	65, 97, 207, 286
Hpy188III	TCNNGA	2 cut(s)	327, 492
Hpy8I	GTNNAC	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	23, 215, 335, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	3 cut(s)	45, 96, 204
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	207, 323, 430
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	6 cut(s)	32, 38, 149, 171, 312, 332
Lsp1109I	GCAGC	4 cut(s)	68, 90, 149, 152
LweI	GCATC	2 cut(s)	119, 194
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	209, 325, 432
MboI	GATC	3 cut(s)	207, 323, 430
MboII	GAAGA	2 cut(s)	33, 384
MflI	RGATCY	3 cut(s)	207, 323, 430
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	24, 171, 287
MnlI	CCTC	6 cut(s)	91, 160, 254, 295, 394, 444
MseI	TTAA	2 cut(s)	30, 153
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	3 cut(s)	207, 323, 430
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	17
PciI	ACATGT	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	58, 80, 139, 142
PscI	ACATGT	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	420
PsuI	RGATCY	3 cut(s)	207, 323, 430
RsaI	GTAC	3 cut(s)	18, 51, 270
RsaNI	GTAC	3 cut(s)	17, 50, 269
SaqAI	TTAA	2 cut(s)	30, 153
SatI	GCNGC	4 cut(s)	57, 79, 138, 141
Sau3AI	GATC	3 cut(s)	207, 323, 430
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	37, 51, 61, 88, 153, 231, 265, 351, 360
SfaNI	GCATC	2 cut(s)	119, 194
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	24, 171, 287
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	3 cut(s)	24, 171, 287
TatI	WGTACW	2 cut(s)	16, 268
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	30, 153
Tru9I	TTAA	2 cut(s)	30, 153
TscAI	CASTG	2 cut(s)	76, 165
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	4 cut(s)	56, 78, 137, 140
Tsp45I	GTSAC	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	76, 165
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.