Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9054333 .. 9055505

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACCCCCCAATCATCTCCAATGGACAATCTTCCACTAGTACTAGTTTTGATACTCCTAGGAGAACTTTCATATGTGGTTTGTGTCTCAAGCCTATTCAACTCGAAGACTCATTCGACTTCAAGGGCTGTCCCCATTTTTATTGTACTCCATGCATTGTGAACTTTGTAGTCTCCAAGCTCCAAGACAATGCCGATTGGTCTCTGCAATGCCCTGTGCCAACCTGCACCGGAACACTAGACCCTGATTACTGCCGGCCAATCCTTCCGAGTCAGGCTTTTGATTCGTGGATGAATGCATATTGTGTGATCAGATCGAGCAATCTTCTTATGGTGCCGAAAGCAGTAATAGTGGAGCTAGCCAAGAAAAAGAAGTGGAGGAAGTGCCCAAAATGCAACTACTATGTTGAGAAAAAAGATGGGTGCACTTACATTAAATGCAGGCATGCTTTCTGTTACAACTGTGGAATAGCAGCTGCCGCTGATGGTACACATACATATCATTGTCCAAGCTGTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

174

Amino Acids

19.58

Weight (kDa)

8.72

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	334
AciI	CCGC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	257
AfaI	GTAC	3 cut(s)	43, 148, 490
AgsI	TTSAA	2 cut(s)	101, 124
AhlI	ACTAGT	2 cut(s)	38, 44
AluBI	AGCT	4 cut(s)	181, 358, 476, 513
AluI	AGCT	4 cut(s)	181, 358, 476, 513
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	3 cut(s)	92, 178, 207
Alw44I	GTGCAC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	473, 476
AspA2I	CCTAGG	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	358
AvrII	CCTAGG	1 cut(s)	59
BaeGI	GKGCMC	2 cut(s)	389, 428
BanI	GGYRCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	463, 485
BccI	CCATC	2 cut(s)	413, 479
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	3 cut(s)	92, 178, 207
BcuI	ACTAGT	2 cut(s)	38, 44
BfaI	CTAG	5 cut(s)	39, 45, 60, 239, 359
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	474, 477, 480
BlnI	CCTAGG	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	475, 478, 481
BmcAI	AGTACT	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	336
BmtI	GCTAGC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	389, 428
BseXI	GCAGC	2 cut(s)	463, 485
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	231, 256
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	3 cut(s)	92, 178, 207
BsmFI	GGGAC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	389, 428
Bsp143I	GATC	2 cut(s)	309, 314
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	233
BspOI	GCTAGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	309, 314
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	257, 360, 443, 447
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	312, 317
BstMAI	GTCTC	3 cut(s)	92, 178, 207
BstMBI	GATC	2 cut(s)	309, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 479
BstNSI	RCATGY	1 cut(s)	449
BstSLI	GKGCMC	2 cut(s)	389, 428
BstV1I	GCAGC	2 cut(s)	463, 485
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	257, 360, 443, 447
Cfr10I	RCCGGY	1 cut(s)	255
Csp6I	GTAC	3 cut(s)	42, 147, 489
CviAII	CATG	2 cut(s)	153, 446
CviJI	RGCY	9 cut(s)	94, 129, 181, 259, 278, 358, 362, 476, 513
CviKI_1	RGCY	9 cut(s)	94, 129, 181, 259, 278, 358, 362, 476, 513
CviQI	GTAC	3 cut(s)	42, 147, 489
DpnI	GATC	2 cut(s)	311, 316
DpnII	GATC	2 cut(s)	309, 314
EaeI	YGGCCR	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	59
EcoT22I	ATGCAT	2 cut(s)	158, 301
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	156, 449
FaiI	YATR	9 cut(s)	74, 76, 154, 301, 332, 405, 447, 495, 499
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	152, 445
FauNDI	CATATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	474, 477, 480
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	474, 477, 480
FspBI	CTAG	5 cut(s)	39, 45, 60, 239, 359
GluI	GCNGC	3 cut(s)	474, 477, 480
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	231, 256
Hin1II	CATG	2 cut(s)	156, 449
HinfI	GANTC	3 cut(s)	110, 271, 284
HpaII	CCGG	2 cut(s)	231, 256
Hpy166II	GTNNAC	3 cut(s)	163, 426, 491
Hpy188I	TCNGA	2 cut(s)	270, 314
Hpy8I	GTNNAC	3 cut(s)	163, 426, 491
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	7 cut(s)	156, 208, 228, 299, 396, 426, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 479
Hsp92II	CATG	2 cut(s)	156, 449
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	309, 314
LmnI	GCTCC	2 cut(s)	186, 355
LpnPI	CCDG	7 cut(s)	228, 238, 244, 258, 260, 269, 427
Lsp1109I	GCAGC	2 cut(s)	463, 485
MaeI	CTAG	5 cut(s)	39, 45, 60, 239, 359
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	311, 316
MboI	GATC	2 cut(s)	309, 314
MboII	GAAGA	3 cut(s)	24, 119, 317
MhlI	GDGCHC	2 cut(s)	389, 428
MlyI	GAGTC	2 cut(s)	104, 280
MnlI	CCTC	1 cut(s)	372
Mph1103I	ATGCAT	2 cut(s)	158, 301
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	2 cut(s)	476, 482
MspI	CCGG	2 cut(s)	231, 256
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	393, 479
NaeI	GCCGGC	1 cut(s)	257
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	2 cut(s)	309, 314
NgoMIV	GCCGGC	1 cut(s)	255
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	156, 449
NlaIV	GGNNCC	1 cut(s)	336
NsiI	ATGCAT	2 cut(s)	158, 301
NspI	RCATGY	1 cut(s)	449
PaeI	GCATGC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	475, 478, 481
PleI	GAGTC	2 cut(s)	104, 279
PpsI	GAGTC	2 cut(s)	104, 279
PspN4I	GGNNCC	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	43, 148, 490
RsaNI	GTAC	3 cut(s)	42, 147, 489
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	474, 477, 480
Sau3AI	GATC	2 cut(s)	309, 314
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	2 cut(s)	104, 280
SduI	GDGCHC	2 cut(s)	389, 428
SetI	ASST	5 cut(s)	183, 227, 360, 478, 515
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SpeI	ACTAGT	2 cut(s)	38, 44
SphI	GCATGC	1 cut(s)	449
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	5 cut(s)	39, 45, 60, 239, 359
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	3 cut(s)	105, 117, 317
TatI	WGTACW	2 cut(s)	41, 146
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	2 cut(s)	473, 476
TspDTI	ATGAA	3 cut(s)	17, 61, 308
VneI	GTGCAC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	449
XmaJI	CCTAGG	1 cut(s)	59
XspI	CTAG	5 cut(s)	39, 45, 60, 239, 359
ZrmI	AGTACT	1 cut(s)	43
Zsp2I	ATGCAT	2 cut(s)	158, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.