Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9056978 .. 9058172

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTACAAGAGGATGGTTAAATCTTCCTGTTGGTTTCTCCATGGAACAATAGATATACAAAGCAACCAACACATTGAGAAGTTACTCCCAGTTCTTGTATCTAGGCTGAATCCGGAGAGGTCCATACCCTTGGCTGTTCTCAAAGGAGCCAAAGGCCTGGCAATCCTAACCGTTGCTAAAGCTGGTGCACTACTTTCTTACAAACTTGGTACTGGTTTGGTGGTTTCTCGAAGGTCAGATGGATCATGGTCTGCTCCATCAACCATATGTTCTGTTGGCTTAGGATGGGGTGCACAGATTGGGGGTGAGCTCATGGACTTCATCATTGTCCTTCCTGATATAAAAGCTGTGAAAACCTTTTGTAGTCGCATGCATTTCTCTCTTGGTGCTGGTGTAGTGCTGCAGCAGGACCTATTGGTAGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

9.51

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ysc84	PF04366	93 - 132	1.3e-08	Las17-binding protein actin regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	112
AclWI	GGATC	1 cut(s)	250
AfaI	GTAC	2 cut(s)	5, 211
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	182, 310, 347
AluI	AGCT	3 cut(s)	182, 310, 347
Alw21I	GWGCWC	3 cut(s)	190, 295, 312
Alw44I	GTGCAC	2 cut(s)	186, 291
AlwI	GGATC	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	154
ApaLI	GTGCAC	2 cut(s)	186, 291
ApeKI	GCWGC	2 cut(s)	400, 403
AspS9I	GGNCC	2 cut(s)	120, 409
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	120, 409
BaeGI	GKGCMC	2 cut(s)	190, 295
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	3 cut(s)	190, 295, 312
BbvI	GCAGC	2 cut(s)	387, 415
BccI	CCATC	4 cut(s)	7, 233, 265, 279
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	401, 404
BlsI	GCNGC	2 cut(s)	402, 405
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	120, 409
BmgT120I	GGNCC	2 cut(s)	120, 409
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	40, 129
BsaWI	WCCGGW	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	89, 217
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	40, 129
BseGI	GGATG	2 cut(s)	18, 290
BseNI	ACTGG	2 cut(s)	89, 217
BseSI	GKGCMC	2 cut(s)	190, 295
BseXI	GCAGC	2 cut(s)	387, 415
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	3 cut(s)	190, 295, 312
BsiSI	CCGG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	3 cut(s)	190, 295, 312
Bsp13I	TCCGGA	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	242
Bsp19I	CCATGG	1 cut(s)	40
BspANI	GGCC	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	89, 217
BssECI	CCNNGG	2 cut(s)	40, 129
BssMI	GATC	1 cut(s)	242
BssT1I	CCWWGG	2 cut(s)	40, 129
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	18, 290
BstKTI	GATC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	401
BstSLI	GKGCMC	2 cut(s)	190, 295
BstV1I	GCAGC	2 cut(s)	387, 415
BstXI	CCANNNNNNTGG	2 cut(s)	130, 157
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	18, 290
Cac8I	GCNNGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	120, 409
Csp6I	GTAC	2 cut(s)	4, 210
CviAII	CATG	4 cut(s)	41, 246, 313, 370
CviJI	RGCY	8 cut(s)	106, 134, 149, 156, 182, 279, 310, 347
CviKI_1	RGCY	8 cut(s)	106, 134, 149, 156, 182, 279, 310, 347
CviQI	GTAC	2 cut(s)	4, 210
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	40, 129
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	120, 409
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	40, 129
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	40, 129
FaeI	CATG	4 cut(s)	44, 249, 316, 373
FaiI	YATR	9 cut(s)	42, 56, 125, 247, 266, 268, 314, 341, 371
FatI	CATG	4 cut(s)	40, 245, 312, 369
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	401, 404
FokI	GGATG	2 cut(s)	25, 297
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	401, 404
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	401, 404
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	4 cut(s)	44, 249, 316, 373
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	188, 293
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	113, 228, 335
Hpy8I	GTNNAC	2 cut(s)	188, 293
HpyAV	CCTTC	2 cut(s)	225, 341
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	188, 293, 373, 403
HpyF3I	CTNAG	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	44, 249, 316, 373
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	146, 259
Lsp1109I	GCAGC	2 cut(s)	387, 415
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	1 cut(s)	15
MhlI	GDGCHC	3 cut(s)	190, 295, 312
MnlI	CCTC	2 cut(s)	3, 111
Mph1103I	ATGCAT	1 cut(s)	375
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	4 cut(s)	44, 249, 316, 373
NlaIV	GGNNCC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	402, 405
PpuMI	RGGWCCY	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	120, 409
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	5, 211
RsaNI	GTAC	2 cut(s)	4, 210
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	401, 404
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	2 cut(s)	120, 409
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	190, 295, 312
SetI	ASST	7 cut(s)	122, 184, 236, 312, 349, 359, 414
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	2 cut(s)	120, 409
SphI	GCATGC	1 cut(s)	373
SseBI	AGGCCT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	40, 129
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	229
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	400, 403
TspDTI	ATGAA	1 cut(s)	310
VneI	GTGCAC	2 cut(s)	186, 291
VpaK11BI	GGWCC	2 cut(s)	120, 409
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.