RchiOBHm_Chr2g0096361

Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
9138542 .. 9141378
2837 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGGAGCAACAGAGAACGGTTCAGCAGCAAGATGAGCTCGAAGAAATGCAGCACGGCCCTGTTCCCGTCGACCAGCTTCAGAAAAAAAAAGTGGAGGAAGGGTTTCCGGTTGCCAACAGTTATTGCAGTGTATGGATGCTTTCTATCCCTCTGTACTGTCACCATGGTATCAATAAGTTGATACCACTAGAAAGAAGTATCAGCCATGGGACGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

5.7

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 1 cut(s) 155
AluBI AGCT 2 cut(s) 37, 76
AluI AGCT 2 cut(s) 37, 76
Alw21I GWGCWC 1 cut(s) 39
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 25, 49
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 37, 61
BceAI ACGGC 1 cut(s) 70
BfaI CTAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 26, 50
BlsI GCNGC 2 cut(s) 27, 51
BmgT120I GGNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 163, 205
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseDI CCNNGG 2 cut(s) 163, 205
BseGI GGATG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 37, 61
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 39
Bsp19I CCATGG 2 cut(s) 163, 205
BspANI GGCC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 163, 205
BssT1I CCWWGG 2 cut(s) 163, 205
Bst4CI ACNGT 3 cut(s) 19, 119, 158
BstDSI CCRYGG 2 cut(s) 163, 205
BstF5I GGATG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 37, 61
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 163, 205
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 164, 206
CviJI RGCY 4 cut(s) 37, 57, 76, 204
CviKI_1 RGCY 4 cut(s) 37, 57, 76, 204
CviQI GTAC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 163, 205
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 163, 205
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 163, 205
FaeI CATG 2 cut(s) 167, 209
FaiI YATR 3 cut(s) 133, 165, 207
FatI CATG 2 cut(s) 163, 205
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 26, 50
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 26, 50
FspBI CTAG 1 cut(s) 188
GluI GCNGC 2 cut(s) 26, 50
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 167, 209
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 3 cut(s) 19, 119, 158
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 49, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 167, 209
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 72, 86, 120
Lsp1109I GCAGC 2 cut(s) 37, 61
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 158
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 2 cut(s) 88, 159
MroXI GAANNNNTTC 1 cut(s) 102
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 2 cut(s) 163, 205
NlaIII CATG 2 cut(s) 167, 209
NmuCI GTSAC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 102
PkrI GCNGC 2 cut(s) 27, 51
Psp124BI GAGCTC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 68
SatI GCNGC 2 cut(s) 26, 50
Sau96I GGNCC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 39, 78, 215
SfaNI GCATC 1 cut(s) 126
SgeI CNNG 9 cut(s) 41, 50, 65, 71, 77, 85, 119, 176, 200
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 2 cut(s) 163, 205
TaaI ACNGT 3 cut(s) 19, 119, 158
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 39, 69
TatI WGTACW 1 cut(s) 153
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 2 cut(s) 25, 49
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.