Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9213020 .. 9213241

Gene Structure 222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCAGTCTTTCTTGAGCAATGTTGTACAGCCTGAAGGGTGGCTAAAGTGGAAAGGTTCCCCCTTCTTTAGGGATACATTGTTCTACGGGGAGTACACGAACTCCGGGCCAGGAGCGAGCAGCCTGAGCAGGGTAAAGTGGCCGGGGTATCAAGTGTTTAAGAAGTCGGGTCAGGTGAAGAACTTCTTTTTTTTTTTTTTTTTTGGGTACAAGGTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0016787 GO:0016788 GO:0030234 GO:0030312 GO:0030599 GO:0042742 GO:0043086 GO:0043207 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098542 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

73

Amino Acids

8.58

Weight (kDa)

10.07

Isoelectric Point (pI)

20.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	1 - 63	1.8e-19	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	27, 95, 209
AfiI	CCNNNNNNNGG	2 cut(s)	69, 130
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AoxI	GGCC	2 cut(s)	107, 140
ApeKI	GCWGC	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	106, 144
AsuHPI	GGTGA	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	2 cut(s)	106, 144
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	106, 111, 144
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	106, 111, 144
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	106, 144
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 130
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	69, 130
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	2 cut(s)	109, 142
BsiSI	CCGG	2 cut(s)	105, 143
BslI	CCNNNNNNNGG	2 cut(s)	69, 130
BsnI	GGCC	2 cut(s)	109, 142
Bsp1407I	TGTACA	1 cut(s)	25
BspANI	GGCC	2 cut(s)	109, 142
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	3 cut(s)	104, 109, 142
BstV1I	GCAGC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	109, 142
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	26, 94, 208
CviJI	RGCY	5 cut(s)	31, 43, 109, 123, 142
CviKI_1	RGCY	5 cut(s)	31, 43, 109, 123, 142
CviQI	GTAC	3 cut(s)	26, 94, 208
DdeI	CTNAG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	109
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	109, 142
HapII	CCGG	2 cut(s)	105, 143
HpaII	CCGG	2 cut(s)	105, 143
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	29, 73
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	45, 96, 115, 118, 123, 137, 156, 158, 202
Lsp1109I	GCAGC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	105, 143
MspR9I	CCNGG	3 cut(s)	106, 111, 144
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	106, 144
NlaIV	GGNNCC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	3 cut(s)	27, 95, 209
RsaNI	GTAC	3 cut(s)	26, 94, 208
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	106, 111, 144
SetI	ASST	4 cut(s)	58, 177, 216, 221
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	104, 109, 142
TatI	WGTACW	2 cut(s)	25, 93
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.