RchiOBHm_Chr2g0097501

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
10118122 .. 10119127
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGGAGGCGGAGCCGACGACGCGTCGACCCAATCGGACGGCGGAGACGGAGTCAACATCAACATCAGAACCCCCAGCGGCTCCAAGTTCGCCCGCTCGCATCAAGCCTCGACGCCACCGTTGGAGGCAGATCATGCTGTTCACTTGGTTCGTGGCTTTGCACCATCTGCTGCAGCCAACACTGCTGGTGCAACAATGCTGGAAGTGAAATTCTACCCAAGCAAGGGGTTTTGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

79

Amino Acids

8.1

Weight (kDa)

6.23

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 26
AccII CGCG 1 cut(s) 23
AciI CCGC 4 cut(s) 9, 42, 78, 94
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 223, 224
AflIII ACRYGT 1 cut(s) 21
AhdI GACNNNNNGTC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 170, 173
ApoI RAATTY 1 cut(s) 209
BbvI GCAGC 2 cut(s) 157, 185
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 3 cut(s) 79, 171, 174
BlsI GCNGC 3 cut(s) 80, 172, 175
BmeRI GACNNNNNGTC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 13, 82
BmsI GCATC 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 224
BseLI CCNNNNNNNGG 2 cut(s) 223, 224
BseXI GCAGC 2 cut(s) 157, 185
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 223, 224
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 130, 234
BspACI CCGC 4 cut(s) 9, 42, 78, 94
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 13, 82
BspMAI CTGCAG 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 96
BssMI GATC 2 cut(s) 130, 234
BssNI GRCGYC 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 134, 167
BstC8I GCNNGC 2 cut(s) 94, 98
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 2 cut(s) 133, 237
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 130, 234
BstMWI GCNNNNNNNGC 4 cut(s) 20, 134, 167, 182
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 157, 185
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 94, 98
CseI GACGC 3 cut(s) 12, 29, 121
CviAII CATG 1 cut(s) 134
CviJI RGCY 5 cut(s) 14, 81, 107, 156, 176
CviKI_1 RGCY 5 cut(s) 14, 81, 107, 156, 176
DpnI GATC 2 cut(s) 132, 236
DpnII GATC 2 cut(s) 130, 234
DriI GACNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 22
EciI GGCGGA 2 cut(s) 24, 57
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 3 cut(s) 79, 171, 174
Fsp4HI GCNGC 3 cut(s) 79, 171, 174
GluI GCNGC 3 cut(s) 79, 171, 174
GsaI CCCAGC 1 cut(s) 78
HgaI GACGC 3 cut(s) 12, 29, 121
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 2 cut(s) 27, 55
HindII GTYRAC 2 cut(s) 27, 55
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 3 cut(s) 27, 55, 142
Hpy188I TCNGA 2 cut(s) 37, 68
Hpy8I GTNNAC 3 cut(s) 27, 55, 142
Hpy99I CGWCG 4 cut(s) 20, 23, 28, 115
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 161, 173, 191
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 134, 167, 182
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 2 cut(s) 130, 234
LmnI GCTCC 2 cut(s) 11, 86
LpnPI CCDG 3 cut(s) 88, 171, 185
Lsp1109I GCAGC 2 cut(s) 157, 185
LweI GCATC 1 cut(s) 109
MalI GATC 2 cut(s) 132, 236
MbiI CCGCTC 1 cut(s) 96
MboI GATC 2 cut(s) 130, 234
MflI RGATCY 1 cut(s) 234
MluCI AATT 1 cut(s) 209
MluI ACGCGT 1 cut(s) 21
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 118, 118
MspA1I CMGCKG 1 cut(s) 78
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 20, 134, 167, 182
NdeII GATC 2 cut(s) 130, 234
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 2 cut(s) 13, 82
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 80, 172, 175
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 13, 82
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 25
SatI GCNGC 3 cut(s) 79, 171, 174
Sau3AI GATC 2 cut(s) 130, 234
SchI GAGTC 1 cut(s) 60
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 171
Sse9I AATT 1 cut(s) 209
SsiI CCGC 4 cut(s) 9, 42, 78, 94
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 26, 110
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 81
TscAI CASTG 1 cut(s) 187
TseI GCWGC 2 cut(s) 170, 173
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 50
XapI RAATTY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.