RchiOBHm_Chr2g0097531

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
10133130 .. 10134391
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGAGAGCTTGATCCTCAACACATTGCAATTTAACATGTCAGTTCCAACACCGTATGTTTTCATGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTTTATCCTTCTTCTTGATCGAGCTCTCTCTCGTGGAGTACGAGATGCTTAAGTTCTCGCATCTTTGTTGGCTGCTAGTGCATAGAACCTGTGAGTGGCACACAAACTACTCGGAAGATCAGCTTTTAGAATGTACAAGTTTGATGGTTGGTTTCCACCAAAAGGCAGCAGCAGGGAAACTCACAGGGGTACATAGGAAGTTCTGTACATCCAAGTTTGGCTTCATTGCGAATTGTGAACCAGCAAGTTTCTCTTACAGACCCAACTATAGCAAGGCATATACTACTAACCTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.1

Weight (kDa)

8.2

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 29 - 69 2e-10 Cyclin, C-terminal domain
Cyclin_C PF02984 78 - 130 2e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AfaI GTAC 4 cut(s) 188, 283, 339, 355
AfiI CCNNNNNNNGG 2 cut(s) 243, 310
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 4 cut(s) 48, 142, 172, 271
AluI AGCT 4 cut(s) 48, 142, 172, 271
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 4 cut(s) 122, 220, 314, 317
Asp700I GAANNNNTTC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 109, 207, 326, 329
BccI CCATC 1 cut(s) 286
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 415
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 4 cut(s) 123, 221, 315, 318
BlsI GCNGC 4 cut(s) 124, 222, 316, 319
BmiI GGNNCC 1 cut(s) 113
BmsI GCATC 2 cut(s) 183, 217
BpuEI CTTGAG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 310
Bse3DI GCAATG 2 cut(s) 62, 372
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 243, 310
BseMI GCAATG 2 cut(s) 62, 372
BseXI GCAGC 4 cut(s) 109, 207, 326, 329
BsiHKAI GWGCWC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 243, 310
Bsp1286I GDGCHC 1 cut(s) 174
Bsp1407I TGTACA 2 cut(s) 281, 353
Bsp143I GATC 3 cut(s) 51, 165, 265
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 62, 372
BsrGI TGTACA 2 cut(s) 281, 353
BssMI GATC 3 cut(s) 51, 165, 265
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 197
BstAUI TGTACA 2 cut(s) 281, 353
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 356
BstKTI GATC 3 cut(s) 54, 168, 268
BstMBI GATC 3 cut(s) 51, 165, 265
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 15, 79
BstSFI CTRYAG 1 cut(s) 415
BstV1I GCAGC 4 cut(s) 109, 207, 326, 329
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 102
Csp6I GTAC 4 cut(s) 187, 282, 338, 354
CviAII CATG 4 cut(s) 12, 76, 103, 444
CviJI RGCY 7 cut(s) 48, 122, 142, 172, 220, 271, 369
CviKI_1 RGCY 7 cut(s) 48, 122, 142, 172, 220, 271, 369
CviQI GTAC 4 cut(s) 187, 282, 338, 354
DpnI GATC 3 cut(s) 53, 167, 267
DpnII GATC 3 cut(s) 51, 165, 265
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 4 cut(s) 15, 79, 106, 447
FalI AAGNNNNNCTT 6 cut(s) 255, 287, 353, 385, 385, 417
FatI CATG 4 cut(s) 11, 75, 102, 443
Fnu4HI GCNGC 4 cut(s) 123, 221, 315, 318
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 123, 221, 315, 318
FspBI CTAG 1 cut(s) 224
GluI GCNGC 4 cut(s) 123, 221, 315, 318
Hin1II CATG 4 cut(s) 15, 79, 106, 447
HindIII AAGCTT 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 2 cut(s) 133, 262
Hpy188III TCNNGA 2 cut(s) 103, 163
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 15, 67, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
Hsp92II CATG 4 cut(s) 15, 79, 106, 447
Kzo9I GATC 3 cut(s) 51, 165, 265
LpnPI CCDG 5 cut(s) 51, 250, 306, 318, 402
Lsp1109I GCAGC 4 cut(s) 109, 207, 326, 329
LweI GCATC 2 cut(s) 183, 217
MaeI CTAG 1 cut(s) 224
MalI GATC 3 cut(s) 53, 167, 267
MboI GATC 3 cut(s) 51, 165, 265
MboII GAAGA 2 cut(s) 151, 275
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 68, 379
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 16, 65, 125
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 72, 198
MspCI CTTAAG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 3 cut(s) 51, 165, 265
NlaIII CATG 4 cut(s) 15, 79, 106, 447
NlaIV GGNNCC 1 cut(s) 113
NspI RCATGY 2 cut(s) 15, 79
PaeI GCATGC 1 cut(s) 15
PagI TCATGA 1 cut(s) 102
PciI ACATGT 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 4 cut(s) 124, 222, 316, 319
PscI ACATGT 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 113
RsaI GTAC 4 cut(s) 188, 283, 339, 355
RsaNI GTAC 4 cut(s) 187, 282, 338, 354
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 72, 198
SatI GCNGC 4 cut(s) 123, 221, 315, 318
Sau3AI GATC 3 cut(s) 51, 165, 265
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 50, 113, 144, 174, 239, 273, 441
SfaNI GCATC 2 cut(s) 183, 217
SfcI CTRYAG 1 cut(s) 415
SmlI CTYRAG 2 cut(s) 116, 197
SmoI CTYRAG 2 cut(s) 116, 197
SphI GCATGC 1 cut(s) 15
Sse9I AATT 2 cut(s) 68, 379
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 68, 379
TatI WGTACW 2 cut(s) 281, 353
Tru1I TTAA 2 cut(s) 72, 198
Tru9I TTAA 2 cut(s) 72, 198
TseI GCWGC 4 cut(s) 122, 220, 314, 317
TspDTI ATGAA 3 cut(s) 91, 119, 361
Vha464I CTTAAG 1 cut(s) 197
XceI RCATGY 2 cut(s) 15, 79
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.