Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10135835 .. 10136323

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATAAAGTGGATTACTTGTTACCGGGTCGTGGGTGACAAGGCCTTCAAGGAGGCCCAGAAGTACAGCAAGCCCAAGGTGATCTGGTCCGGTAAGTCGGAAAAGTACACAAAGATTCCGGCGTTTGATGCTCTAGAGCAGACCCCAGATGCTAAGTACTTGCATATATGTGCAAATGAGACCATTCATGGGGTTGAGTTCAAAACCTACCCAACCCCCAAAAATGGGCTCTTGATTGCTGATATGTCCTCTAATTTTTGCTCAAAGCCTGTGACGTTTCTAAATTCGGGATCATCTACGCCGGGGCACAGAAGAATGTGGGGCCATCTGGGTGACCATTGTGATCATCAGGAAGGATCTGATTGGAAATGCTCAGGAAGTCCACCAGTAATGCTTGATTACAAGATCCATGATGATAACAATTCGCTGTATAATACTCCTCCCTGCTATGGGATTTACATGTGTGGGCTTGTGTTGAGGATTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

162

Amino Acids

18.31

Weight (kDa)

8.37

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	298, 364, 400
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	3 cut(s)	65, 107, 158
AfiI	CCNNNNNNNGG	6 cut(s)	31, 189, 224, 225, 449, 450
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	49, 202
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	298, 364, 400
AoxI	GGCC	3 cut(s)	42, 54, 322
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	55, 87, 322
AsuC2I	CCSGG	2 cut(s)	26, 303
AsuHPI	GGTGA	3 cut(s)	47, 91, 344
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	231
BccI	CCATC	1 cut(s)	333
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	26, 303
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	134, 487
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	26, 303
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	55, 87, 322
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	26, 303
BmsI	GCATC	2 cut(s)	118, 139
Bpu10I	CCTNAGC	1 cut(s)	373
BpuMI	CCSGG	2 cut(s)	26, 303
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	75, 302
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 189, 224, 225, 449, 450
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	75, 302
BseLI	CCNNNNNNNGG	6 cut(s)	31, 189, 224, 225, 449, 450
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	309
BshFI	GGCC	3 cut(s)	44, 56, 324
BsiSI	CCGG	4 cut(s)	25, 90, 119, 302
BslI	CCNNNNNNNGG	6 cut(s)	31, 189, 224, 225, 449, 450
BsmAI	GTCTC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	44, 56, 324
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	231, 309
Bsp143I	GATC	5 cut(s)	81, 290, 343, 356, 405
BspANI	GGCC	3 cut(s)	44, 56, 324
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	298, 364, 400
BspTNI	GGTCTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	75, 302
BssMI	GATC	5 cut(s)	81, 290, 343, 356, 405
BssT1I	CCWWGG	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	153, 373
BstEII	GGTNACC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	84, 293, 346, 359, 408
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	5 cut(s)	81, 290, 343, 356, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	24, 301
BstSLI	GKGCMC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	356, 405
BstYI	RGATCY	2 cut(s)	356, 405
BsuRI	GGCC	3 cut(s)	44, 56, 324
Cac8I	GCNNGC	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	55, 87, 322
Csp6I	GTAC	3 cut(s)	64, 106, 157
CviAII	CATG	3 cut(s)	188, 410, 460
CviJI	RGCY	7 cut(s)	44, 56, 73, 229, 268, 324, 469
CviKI_1	RGCY	7 cut(s)	44, 56, 73, 229, 268, 324, 469
CviQI	GTAC	3 cut(s)	64, 106, 157
DdeI	CTNAG	2 cut(s)	153, 373
DpnI	GATC	5 cut(s)	83, 292, 345, 358, 407
DpnII	GATC	5 cut(s)	81, 290, 343, 356, 405
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	191, 413, 463
FaiI	YATR	9 cut(s)	165, 167, 169, 189, 245, 411, 432, 450, 461
FatI	CATG	3 cut(s)	187, 409, 459
FbaI	TGATCA	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	134, 487
HaeIII	GGCC	3 cut(s)	44, 56, 324
HapII	CCGG	4 cut(s)	25, 90, 119, 302
Hin1II	CATG	3 cut(s)	191, 413, 463
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	4 cut(s)	25, 90, 119, 302
HphI	GGTGA	3 cut(s)	47, 91, 344
Hpy166II	GTNNAC	2 cut(s)	108, 383
Hpy188I	TCNGA	2 cut(s)	100, 361
Hpy188III	TCNNGA	5 cut(s)	134, 232, 288, 350, 375
Hpy8I	GTNNAC	2 cut(s)	108, 383
HpyAV	CCTTC	2 cut(s)	55, 347
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	163, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	153, 373
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	191, 413, 463
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	81, 290, 343, 356, 405
LweI	GCATC	2 cut(s)	118, 139
MaeI	CTAG	2 cut(s)	134, 487
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	4 cut(s)	20, 35, 271, 332
MalI	GATC	5 cut(s)	83, 292, 345, 358, 407
MboI	GATC	5 cut(s)	81, 290, 343, 356, 405
MboII	GAAGA	1 cut(s)	324
MflI	RGATCY	2 cut(s)	356, 405
MhlI	GDGCHC	2 cut(s)	231, 309
MluCI	AATT	3 cut(s)	253, 283, 421
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	46, 259, 450, 471
MslI	CAYNNNNRTG	2 cut(s)	168, 330
MspI	CCGG	4 cut(s)	25, 90, 119, 302
MspR9I	CCNGG	2 cut(s)	26, 303
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	2 cut(s)	26, 303
NdeII	GATC	5 cut(s)	81, 290, 343, 356, 405
NlaIII	CATG	3 cut(s)	191, 413, 463
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	3 cut(s)	35, 271, 332
NspI	RCATGY	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	44
PciI	ACATGT	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	115
PscI	ACATGT	1 cut(s)	459
PspEI	GGTNACC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	3 cut(s)	55, 87, 322
PsuI	RGATCY	2 cut(s)	356, 405
RsaI	GTAC	3 cut(s)	65, 107, 158
RsaNI	GTAC	3 cut(s)	64, 106, 157
RseI	CAYNNNNRTG	2 cut(s)	168, 330
Sau3AI	GATC	5 cut(s)	81, 290, 343, 356, 405
Sau96I	GGNCC	3 cut(s)	55, 87, 322
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	26, 303
SduI	GDGCHC	2 cut(s)	231, 309
SetI	ASST	3 cut(s)	81, 209, 278
SfaNI	GCATC	2 cut(s)	118, 139
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	168, 330
Sse9I	AATT	3 cut(s)	253, 283, 421
SseBI	AGGCCT	1 cut(s)	44
SspMI	CTAG	2 cut(s)	134, 487
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	24, 301
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	278
TasI	AATT	3 cut(s)	253, 283, 421
TatI	WGTACW	3 cut(s)	63, 105, 156
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	35, 271, 332
Tsp45I	GTSAC	3 cut(s)	35, 271, 332
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	2 cut(s)	134, 487
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.