RchiOBHm_Chr2g0097721

Endochitinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
10293321 .. 10293959
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGATAATCAGCCTATATATTGGTCAATTTGTGGATGATGTGTTATATATAGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAGGGGACTCAACCAGGCTGAGTATTGCACTCCATCAGCCCAATATCCATGCGCTTCTGGCAAAAAGGATTACGGTCGAGGACCTATTCAACTTACTTACAACTACAACTACGCTCAAGCAGGTCAAGCAATCGGAGTGGATCTGATAAATAACCTAGACCTAGTGGCCACAGACCCGGTTGTATCATTCAAGACAGCAACATGGTTTTGGATGACTAGGGATGGCAAAAATCTCCAGCGGGGCGGAGCTCAATTGGATACCCGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 ko04016 map00520 map01100 map04016
Pfam Domains
Protein Families
Chitin_bind_1 Glyco_hydro_19

Protein Analysis

124

Amino Acids

13.73

Weight (kDa)

5.07

Isoelectric Point (pI)

19.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_19 PF00182 17 - 110 1.7e-44 Chitinase class I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 369
AciI CCGC 3 cut(s) 343, 348, 367
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 59, 270
AgsI TTSAA 2 cut(s) 194, 295
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw21I GWGCWC 2 cut(s) 70, 355
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 1 cut(s) 252
AoxI GGCC 2 cut(s) 59, 270
ApaLI GTGCAC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 77, 185
AsuC2I CCSGG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 77, 185
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 2 cut(s) 61, 272
BanII GRGCYC 1 cut(s) 355
Bbv12I GWGCWC 2 cut(s) 70, 355
BccI CCATC 4 cut(s) 51, 68, 145, 320
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 281
BfaI CTAG 3 cut(s) 260, 266, 321
BfuAI ACCTGC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 119, 281
Bme18I GGWCC 2 cut(s) 77, 185
BmgT120I GGNCC 2 cut(s) 77, 185
BmrFI CCNGG 2 cut(s) 119, 281
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 4 cut(s) 40, 62, 321, 331
BseMII CTCAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 61, 272
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 2 cut(s) 70, 355
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 2 cut(s) 61, 272
Bsp1286I GDGCHC 2 cut(s) 70, 355
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 3 cut(s) 343, 348, 367
BspANI GGCC 2 cut(s) 61, 272
BspCNI CTCAG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 369
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 4 cut(s) 40, 62, 321, 331
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 162, 230
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 117, 279
BstSLI GKGCMC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 61, 272
BtsCI GGATG 4 cut(s) 40, 62, 321, 331
BveI ACCTGC 1 cut(s) 215
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 77, 185
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 2 cut(s) 153, 306
CviJI RGCY 6 cut(s) 12, 61, 122, 143, 272, 353
CviKI_1 RGCY 6 cut(s) 12, 61, 122, 143, 272, 353
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 59, 270
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 77, 185
Eco53kI GAGCTC 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 355
FaeI CATG 2 cut(s) 156, 309
FaiI YATR 8 cut(s) 16, 18, 46, 48, 50, 84, 154, 307
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 152, 305
FauI CCCGC 1 cut(s) 336
FokI GGATG 4 cut(s) 47, 69, 328, 338
FriOI GRGCYC 1 cut(s) 355
FspBI CTAG 3 cut(s) 260, 266, 321
GlaI GCGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 2 cut(s) 61, 272
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 156, 309
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 239, 249
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 68, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 230
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 156, 309
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 350, 374
LpnPI CCDG 8 cut(s) 84, 91, 104, 131, 147, 210, 294, 353
MaeI CTAG 3 cut(s) 260, 266, 321
MalI GATC 1 cut(s) 246
MbiI CCGCTC 1 cut(s) 369
MboI GATC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 70, 355
MlsI TGGCCA 2 cut(s) 61, 272
MluCI AATT 2 cut(s) 26, 356
MluNI TGGCCA 2 cut(s) 61, 272
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 2 cut(s) 47, 176
Mox20I TGGCCA 2 cut(s) 61, 272
MscI TGGCCA 2 cut(s) 61, 272
Msp20I TGGCCA 2 cut(s) 61, 272
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 119, 281
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 162, 230
NciI CCSGG 1 cut(s) 281
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 156, 309
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PpuMI RGGWCCY 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 2 cut(s) 77, 185
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 1 cut(s) 244
SacI GAGCTC 1 cut(s) 355
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 77, 185
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 119, 281
SduI GDGCHC 2 cut(s) 70, 355
SetI ASST 5 cut(s) 190, 229, 261, 267, 355
SinI GGWCC 2 cut(s) 77, 185
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 2 cut(s) 26, 356
SsiI CCGC 3 cut(s) 343, 348, 367
SspMI CTAG 3 cut(s) 260, 266, 321
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 117, 279
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 26, 356
VneI GTGCAC 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 77, 185
XspI CTAG 3 cut(s) 260, 266, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.