RchiOBHm_Chr2g0098111

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
10576232 .. 10576929
698 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGTGAAGTTTCCGCTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGAGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGAAGTATACACCGGCCGCGGATGGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCGATGGGGCTAATTGCCTTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCATTGTAAACGTGAATTTTTGTTGTGCCAAGAAGATTCGAGAATTGTGA

Protein Analysis

104

Amino Acids

11.56

Weight (kDa)

7.72

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M76 PF09768 40 - 65 5.8e-06 Peptidase M76 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 14, 108, 110
AcoI YGGCCR 2 cut(s) 105, 246
AcsI RAATTY 1 cut(s) 280
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 3 cut(s) 65, 105, 246
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 16, 271
BalI TGGCCA 1 cut(s) 248
BbvI GCAGC 1 cut(s) 181
BccI CCATC 3 cut(s) 107, 196, 257
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BisI GCNGC 2 cut(s) 108, 195
BlsI GCNGC 2 cut(s) 109, 196
BmgT120I GGNCC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 117
BseMI GCAATG 1 cut(s) 72
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 67, 107, 248
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 104
BsnI GGCC 3 cut(s) 67, 107, 248
BspACI CCGC 3 cut(s) 14, 108, 110
BspANI GGCC 3 cut(s) 67, 107, 248
BspFNI CGCG 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 108
BssNAI GTATAC 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 110
BstMCI CGRYCG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 133
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 256
BstZ17I GTATAC 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 3 cut(s) 67, 107, 248
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 65
Cfr42I CCGCGG 1 cut(s) 111
CviAII CATG 5 cut(s) 124, 130, 161, 173, 223
CviJI RGCY 6 cut(s) 67, 107, 166, 194, 208, 248
CviKI_1 RGCY 6 cut(s) 67, 107, 166, 194, 208, 248
DdeI CTNAG 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 105, 246
EagI CGGCCG 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 105
FaeI CATG 5 cut(s) 127, 133, 164, 176, 226
FaiI YATR 6 cut(s) 99, 125, 131, 162, 174, 224
FatI CATG 5 cut(s) 123, 129, 160, 172, 222
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 108, 195
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 108, 195
GluI GCNGC 2 cut(s) 108, 195
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 3 cut(s) 67, 107, 248
HapII CCGG 1 cut(s) 104
Hin1II CATG 5 cut(s) 127, 133, 164, 176, 226
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 237, 301
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 16, 271
Hpy166II GTNNAC 3 cut(s) 99, 145, 274
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 3 cut(s) 99, 145, 274
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 5 cut(s) 127, 133, 164, 176, 226
KspI CCGCGG 1 cut(s) 111
LmnI GCTCC 2 cut(s) 19, 202
LpnPI CCDG 5 cut(s) 2, 21, 48, 117, 230
Lsp1109I GCAGC 1 cut(s) 181
MaeII ACGT 1 cut(s) 276
MboII GAAGA 3 cut(s) 93, 96, 310
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 4 cut(s) 168, 210, 280, 308
MluNI TGGCCA 1 cut(s) 248
MnlI CCTC 2 cut(s) 46, 133
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 128, 254
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 16, 110
MspI CCGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 110
NlaIII CATG 5 cut(s) 127, 133, 164, 176, 226
NspI RCATGY 1 cut(s) 133
PfeI GAWTC 2 cut(s) 237, 301
PkrI GCNGC 2 cut(s) 109, 196
PspFI CCCAGC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 128, 254
SacII CCGCGG 1 cut(s) 111
SatI GCNGC 2 cut(s) 108, 195
Sau96I GGNCC 1 cut(s) 65
SetI ASST 3 cut(s) 144, 168, 279
Sfr303I CCGCGG 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 128, 254
Sse9I AATT 4 cut(s) 168, 210, 280, 308
SsiI CCGC 3 cut(s) 14, 108, 110
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 304
TasI AATT 4 cut(s) 168, 210, 280, 308
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 237, 301
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 61, 140, 161, 208
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.