RchiOBHm_Chr2g0099871

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
11923571 .. 11923780
210 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGTCTGTGGTCGAGCTGTGGCCTGTGGAGATGAGAGAATCATAGTGTTCACCACCAACCATAAGGATGATAAGCTAGACCCTGCGTTGTTGCGCCCTGGTCTACCGGACTTGCACATTCACTTGTCATGTTGCACCCCGAGTGGGTTCACAACCTTGGCATTCAAGAAAGCAACCCTCATCCCCTGTGTGGAGATATTGAAGGCTTGA

Protein Analysis

69

Amino Acids

7.48

Weight (kDa)

7.66

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 144, 190
AgsI TTSAA 2 cut(s) 166, 202
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 17, 76
AluI AGCT 2 cut(s) 17, 76
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 97, 156
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 190
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 97, 156
BseGI GGATG 2 cut(s) 73, 180
BseLI CCNNNNNNNGG 2 cut(s) 144, 190
BshFI GGCC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 144, 190
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 139
BspANI GGCC 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 97, 156
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 73, 180
BstHHI GCGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 73, 180
CfoI GCGC 1 cut(s) 96
CviAII CATG 1 cut(s) 129
CviJI RGCY 4 cut(s) 17, 23, 76, 206
CviKI_1 RGCY 4 cut(s) 17, 23, 76, 206
Eco130I CCWWGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 132
FaiI YATR 3 cut(s) 44, 63, 130
FatI CATG 1 cut(s) 128
FblI GTMKAC 1 cut(s) 103
FokI GGATG 2 cut(s) 80, 167
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 51, 104, 150
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 51, 104, 150
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 115, 135
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 37, 84, 96, 111, 120, 199
MaeI CTAG 1 cut(s) 77
MnlI CCTC 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 132
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 19, 78, 158
SmiMI CAYNNNNRTG 1 cut(s) 66
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 13
TfiI GAWTC 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.