RchiOBHm_Chr2g0100371

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
12334408 .. 12334626
219 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGCTCACTGTAACCTAGCCTGCTCTTCTTTCTGGCTCTTTTTTCCTCTCATATGCTCTTTGTTTATGTCAAAAAAAAACCTTGGCGGTCTCGACCCACACTTTTATGACAACACTTGCCCACAAGCTCAAGAGATTGTAAAGTTCGTAGATGCTGAGGCTGCTGCAATAGATGGAAGAATGCCTGCTTCTTTGCTCAGGCAGCATTTCCATGACTGA

Protein Analysis

72

Amino Acids

8.12

Weight (kDa)

6.0

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 161, 164, 202
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 148, 151, 214
BccI CCATC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 17
BisI GCNGC 3 cut(s) 162, 165, 203
BlsI GCNGC 3 cut(s) 163, 166, 204
BmsI GCATC 1 cut(s) 142
Bpu10I CCTNAGC 2 cut(s) 156, 197
BpuEI CTTGAG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 147, 211
BseXI GCAGC 3 cut(s) 148, 151, 214
BsmAI GTCTC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 95
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 148, 210
BspQI GCTCTTC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 22, 186
BstDEI CTNAG 2 cut(s) 156, 197
BstMAI GTCTC 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 161, 202
BstV1I GCAGC 3 cut(s) 148, 151, 214
BtsIMutI CAGTG 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 22, 186
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 5, 20, 37, 128, 161
CviKI_1 RGCY 5 cut(s) 5, 20, 37, 128, 161
DdeI CTNAG 2 cut(s) 156, 197
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 53, 55, 68, 108, 213
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 162, 165, 203
Fsp4HI GCNGC 3 cut(s) 162, 165, 203
FspBI CTAG 1 cut(s) 17
GluI GCNGC 3 cut(s) 162, 165, 203
Hin1II CATG 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 92, 131
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 202
HpyF3I CTNAG 2 cut(s) 156, 197
Hsp92II CATG 1 cut(s) 215
LguI GCTCTTC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 19, 34, 184, 198
Lsp1109I GCAGC 3 cut(s) 148, 151, 214
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 2 cut(s) 18, 189
MnlI CCTC 2 cut(s) 57, 151
MslI CAYNNNNRTG 2 cut(s) 105, 210
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 161, 202
NdeI CATATG 1 cut(s) 53
NlaIII CATG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 31
PctI GAATGC 1 cut(s) 186
PkrI GCNGC 3 cut(s) 163, 166, 204
RseI CAYNNNNRTG 2 cut(s) 105, 210
SapI GCTCTTC 1 cut(s) 31
SatI GCNGC 3 cut(s) 162, 165, 203
SetI ASST 3 cut(s) 18, 84, 130
SfaNI GCATC 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 105, 210
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 93
TscAI CASTG 1 cut(s) 14
TseI GCWGC 3 cut(s) 161, 164, 202
TspRI CASTG 1 cut(s) 14
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.