RchiOBHm_Chr2g0104351

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
15726287 .. 15727037
751 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 177 bp
ATGGAAGGCAAGGGATTGATCATCAGAGGTTGGGCTCCTCAGGTTTTGATTCTTGATCATCCTAGTGTTGGTGGGTTTGTGACTCATTGTGGTGGAATTCCACATTGGAAGGAATTTCTGCTTGGGTTGCCTATGGTGACATGGACCGTGTCTGCTGGGCAATTTTACAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.39

Weight (kDa)

6.24

Isoelectric Point (pI)

15.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 7 - 57 1.1e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 96, 113
AfiI CCNNNNNNNGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 4 cut(s) 88, 105, 120, 137
ApoI RAATTY 2 cut(s) 96, 113
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 39
BanII GRGCYC 1 cut(s) 37
BclI TGATCA 2 cut(s) 18, 55
BfaI CTAG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 18, 55
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 36
BssMI GATC 2 cut(s) 18, 55
Bst4CI ACNGT 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 21, 58
BstMBI GATC 2 cut(s) 18, 55
BstMWI GCNNNNNNNGC 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 144
CviAII CATG 1 cut(s) 141
CviJI RGCY 1 cut(s) 35
CviKI_1 RGCY 1 cut(s) 35
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 20, 57
DpnII GATC 2 cut(s) 18, 55
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 1 cut(s) 144
FaiI YATR 2 cut(s) 134, 142
FatI CATG 1 cut(s) 140
FbaI TGATCA 2 cut(s) 18, 55
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 37
FspBI CTAG 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 144
HinfI GANTC 2 cut(s) 49, 82
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 18, 55
Kzo9I GATC 2 cut(s) 18, 55
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 26, 141
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 79, 136
MalI GATC 2 cut(s) 20, 57
MboI GATC 2 cut(s) 18, 55
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 96, 113, 161
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 2 cut(s) 20, 48
MslI CAYNNNNRTG 2 cut(s) 63, 90
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 2 cut(s) 18, 55
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 79, 136
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 148
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 144
PsyI GACNNNGTC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 63, 90
Sau3AI GATC 2 cut(s) 18, 55
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 37
SetI ASST 2 cut(s) 31, 45
SgeI CNNG 8 cut(s) 22, 53, 65, 75, 134, 153, 160, 168
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 63, 90
Sse9I AATT 3 cut(s) 96, 113, 161
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 148
TasI AATT 3 cut(s) 96, 113, 161
TfiI GAWTC 1 cut(s) 49
TseFI GTSAC 2 cut(s) 79, 136
Tsp45I GTSAC 2 cut(s) 79, 136
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 2 cut(s) 96, 113
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.