RchiOBHm_Chr2g0105191

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
16510518 .. 16511177
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGAAGGAGATCTGCGAAACTTGCTTTTTAGAAATCTACCACTTCTTGTTGAGGTTTACTTTTTTGGAAAGGTTGCGACATGATGTATTAGAGATTGCCTTCCGGTCCCTTTCCTTCTGTCTTTCTAAATTGGAGATTCTCAAACTCAATTGTACGATTGTGTGGCCCGAAAGGGATTTTGTAATTCCTTTGTTACCTAATCCCAAGCGTTTCGAATTAGCATATGATGAAGATGAAGACTCTGCTCTTCTCCATCTCATATCTTTTATTAAGGAATCTCCTTGCTTGCGTACACCAGTGTTGCTGATTCACATGATGATGATGATGATGATTCTCAATGTTCTGTTGATGCTTGGCTATTCAGTTAGGGGGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

15.0

Weight (kDa)

6.07

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 2 cut(s) 154, 292
AoxI GGCC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 105, 165
AsuII TTCGAA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 243
BccI CCATC 1 cut(s) 261
BglII AGATCT 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 105, 165
BmiI GGNNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 296
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 213
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 213
BsrI ACTGG 1 cut(s) 296
BssMI GATC 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 287
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 105, 165
Csp6I GTAC 2 cut(s) 153, 291
CviAII CATG 2 cut(s) 80, 313
CviJI RGCY 2 cut(s) 166, 357
CviKI_1 RGCY 2 cut(s) 166, 357
CviQI GTAC 2 cut(s) 153, 291
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 105
FaeI CATG 2 cut(s) 83, 316
FaiI YATR 5 cut(s) 81, 223, 225, 260, 314
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 79, 312
FauNDI CATATG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 103
Hin1II CATG 2 cut(s) 83, 316
HinfI GANTC 5 cut(s) 136, 239, 275, 307, 331
HpaII CCGG 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 57, 293
Hpy8I GTNNAC 2 cut(s) 57, 293
HpyAV CCTTC 2 cut(s) 109, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 83, 316
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 252
LpnPI CCDG 2 cut(s) 116, 309
LweI GCATC 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 239, 242, 248
MfeI CAATTG 1 cut(s) 148
MflI RGATCY 1 cut(s) 9
MluCI AATT 5 cut(s) 128, 148, 183, 215, 374
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 1 cut(s) 45
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeI CATATG 1 cut(s) 223
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 83, 316
NlaIV GGNNCC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 136, 275, 307, 331
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 2 cut(s) 105, 165
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 2 cut(s) 154, 292
RsaNI GTAC 2 cut(s) 153, 291
RseI CAYNNNNRTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 105, 165
SchI GAGTC 1 cut(s) 233
SetI ASST 3 cut(s) 56, 74, 199
SfaNI GCATC 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 5 cut(s) 128, 148, 183, 215, 374
TaqI TCGA 1 cut(s) 213
TasI AATT 5 cut(s) 128, 148, 183, 215, 374
TfiI GAWTC 4 cut(s) 136, 275, 307, 331
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 303
TspDTI ATGAA 3 cut(s) 17, 243, 249
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.