Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18468056 .. 18469320

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCATTGATTCAGTGACTTCATCCCCTCTGGGCCCACCAGCCACCGAGAAGGACGCCAAGGCGCTTCAGTTCATAGAGGAGACGACCAAGAACACTGACGCTGTGCAGGAGAGGGTTCTCATTGAGATTCTCAGCCGAAACGCCGAAACGGAGTACCTGAAGCGTTTCGGCCTCAACGGAGCTACTGACCGTGACACGTTCAAGTCCAAAATCCCGGTGGTCACGTATGAAGATCTTCAGCCTGAGATTCAACGTATCGCTAATGGTGACCGCTCTCCCATCTTGAGCTCTCATCCCATCTCTGAATTCCTTACCAGTTCTGGGACTTCAGCCGGTGAGAGAAAACTGATGCCTACGATTCACGAAGAATTGGACCGTCGCACGCTACTGTACAGCTTGCTCCAGCCTGTGATGAATCTTTACGTGCCCGACTTGGACAAGGGAAAGGGATTGTACTTTTTGTTCATCAAGGCCGAGACCAAGACTCCCGGTGGGCTATTAGCCCGTCCGGTTTTGACGAGTTACTACAAGAGCGAGCACTTCAAGACCAGGCCGTACGACCCCTACAATGTCTACACCAGCCCCAACGAAGCCATTCTCTGCTCCGACTCGTTTCAAAGCATGTACGCCCAAATGCTTTGCGGCCTCATCATGCGCGAGCAAGTCCTCCGCGTAGGGGCGGTCTTCGCCTCCGGCCTACTCCGAGCCATCCGTTTCCTTCAGCTCAACTGGCAGCAACTAGCCGAAGACATCAAAACCGGAATTCTAAACCCTAAAATCACAGATGTTTCTATCCGGGAGAAGATGGTGGAGCTTTTGAAACCCGACGCGGAGCTGGTGGAGTTCATCAAAAAGGAGTGTGAAGGAGAGAATTGGGAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010252 GO:0010279 GO:0016874 GO:0016879 GO:0016881 GO:0042221 GO:0042592 GO:0048878 GO:0050896 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

295

Amino Acids

33.3

Weight (kDa)

5.36

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3	PF03321	23 - 295	1.8e-103	GH3 family N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	3 cut(s)	660, 675, 833
AciI	CCGC	5 cut(s)	274, 645, 673, 683, 833
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	308, 765
AcuI	CTGAAG	5 cut(s)	53, 182, 224, 315, 707
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	5 cut(s)	158, 395, 458, 560, 629
AfiI	CCNNNNNNNGG	2 cut(s)	324, 679
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	5 cut(s)	205, 254, 547, 620, 823
AjnI	CCWGG	1 cut(s)	551
AluBI	AGCT	6 cut(s)	185, 291, 399, 727, 817, 838
AluI	AGCT	6 cut(s)	185, 291, 399, 727, 817, 838
Alw21I	GWGCWC	2 cut(s)	293, 543
Alw26I	GTCTC	2 cut(s)	77, 473
AoxI	GGCC	7 cut(s)	3, 34, 172, 474, 554, 646, 697
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	736
ApoI	RAATTY	2 cut(s)	308, 765
Asp700I	GAANNNNTTC	3 cut(s)	167, 237, 597
AspLEI	GCGC	2 cut(s)	67, 660
AspS9I	GGNCC	3 cut(s)	34, 35, 376
AsuC2I	CCSGG	3 cut(s)	218, 492, 800
AsuHPI	GGTGA	2 cut(s)	281, 350
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	2 cut(s)	38, 432
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	38, 293
BbsI	GAAGAC	2 cut(s)	679, 756
Bbv12I	GWGCWC	2 cut(s)	293, 543
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	4 cut(s)	290, 308, 719, 802
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	553
BcnI	CCSGG	3 cut(s)	218, 492, 800
BcoDI	GTCTC	2 cut(s)	77, 473
BfaI	CTAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	68
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	2 cut(s)	646, 737
BlsI	GCNGC	2 cut(s)	647, 738
Bme1390I	CCNGG	4 cut(s)	218, 492, 553, 800
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	3 cut(s)	34, 35, 376
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	4 cut(s)	218, 492, 553, 800
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	679, 756
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	3 cut(s)	218, 492, 800
BsaAI	YACGTR	2 cut(s)	228, 427
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	511, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 679
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	318, 737
BseBI	CCWGG	1 cut(s)	553
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	23, 295, 711
BseLI	CCNNNNNNNGG	2 cut(s)	324, 679
BseMII	CTCAG	2 cut(s)	148, 237
BseNI	ACTGG	2 cut(s)	318, 737
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	38, 432
BseXI	GCAGC	1 cut(s)	748
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	3 cut(s)	660, 675, 833
BshFI	GGCC	7 cut(s)	5, 36, 174, 476, 556, 648, 699
BsiHKAI	GWGCWC	2 cut(s)	293, 543
BsiSI	CCGG	7 cut(s)	218, 336, 492, 512, 696, 762, 799
BsiWI	CGTACG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	324, 679
BsmAI	GTCTC	2 cut(s)	77, 473
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	7 cut(s)	5, 36, 174, 476, 556, 648, 699
Bso31I	GGTCTC	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	4 cut(s)	38, 293, 432, 543
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	5 cut(s)	274, 645, 673, 683, 833
BspANI	GGCC	7 cut(s)	5, 36, 174, 476, 556, 648, 699
BspCNI	CTCAG	2 cut(s)	147, 238
BspFNI	CGCG	3 cut(s)	660, 675, 833
BspLI	GGNNCC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	318, 737
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	553
Bst4CI	ACNGT	3 cut(s)	194, 380, 393
BstACI	GRCGYC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	393
BstBAI	YACGTR	2 cut(s)	228, 427
BstC8I	GCNNGC	4 cut(s)	386, 401, 539, 662
BstDEI	CTNAG	2 cut(s)	134, 246
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	23, 295, 711
BstFNI	CGCG	3 cut(s)	660, 675, 833
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	67, 660
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	77, 473
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 733
BstNI	CCWGG	1 cut(s)	553
BstNSI	RCATGY	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	4 cut(s)	216, 490, 551, 798
BstSLI	GKGCMC	2 cut(s)	38, 432
BstUI	CGCG	3 cut(s)	660, 675, 833
BstV1I	GCAGC	1 cut(s)	748
BstV2I	GAAGAC	2 cut(s)	679, 756
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	7 cut(s)	5, 36, 174, 476, 556, 648, 699
BtsCI	GGATG	3 cut(s)	23, 295, 711
BtsIMutI	CAGTG	2 cut(s)	21, 96
Cac8I	GCNNGC	4 cut(s)	386, 401, 539, 662
CfoI	GCGC	2 cut(s)	67, 660
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	34, 35, 376
CseI	GACGC	3 cut(s)	65, 110, 839
Csp6I	GTAC	5 cut(s)	157, 394, 457, 559, 628
CviAII	CATG	2 cut(s)	625, 655
CviQI	GTAC	5 cut(s)	157, 394, 457, 559, 628
DdeI	CTNAG	2 cut(s)	134, 246
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	38, 293
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	5 cut(s)	53, 182, 224, 315, 707
Eco91I	GGTNACC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	269
EcoRI	GAATTC	2 cut(s)	308, 765
EcoRII	CCWGG	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	38, 293
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	628, 658
FaiI	YATR	4 cut(s)	77, 231, 626, 656
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	624, 654
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	646, 737
FokI	GGATG	3 cut(s)	10, 282, 698
FriOI	GRGCYC	2 cut(s)	38, 293
Fsp4HI	GCNGC	2 cut(s)	646, 737
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	2 cut(s)	66, 659
GluI	GCNGC	2 cut(s)	646, 737
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	7 cut(s)	5, 36, 174, 476, 556, 648, 699
HapII	CCGG	7 cut(s)	218, 336, 492, 512, 696, 762, 799
HgaI	GACGC	3 cut(s)	65, 110, 839
HhaI	GCGC	2 cut(s)	67, 660
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	628, 658
Hin6I	GCGC	2 cut(s)	65, 658
HinP1I	GCGC	2 cut(s)	65, 658
HinfI	GANTC	7 cut(s)	11, 130, 250, 361, 418, 487, 611
HpaII	CCGG	7 cut(s)	218, 336, 492, 512, 696, 762, 799
HphI	GGTGA	2 cut(s)	281, 350
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	307, 610, 707
Hpy188III	TCNNGA	3 cut(s)	286, 365, 547
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	2 cut(s)	384, 833
HpyAV	CCTTC	3 cut(s)	46, 731, 860
HpyCH4III	ACNGT	3 cut(s)	194, 380, 393
HpyCH4IV	ACGT	4 cut(s)	200, 227, 256, 426
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 733
HpyF3I	CTNAG	2 cut(s)	134, 246
HpySE526I	ACGT	4 cut(s)	200, 227, 256, 426
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	628, 658
HspAI	GCGC	2 cut(s)	65, 658
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	5 cut(s)	182, 408, 611, 814, 835
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	4 cut(s)	200, 227, 256, 426
MaeIII	GTNAC	5 cut(s)	16, 194, 223, 269, 524
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	1 cut(s)	235
MboII	GAAGA	6 cut(s)	230, 245, 380, 679, 761, 817
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	4 cut(s)	38, 293, 432, 543
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	308, 371, 765, 874
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	481, 605
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	8 cut(s)	39, 73, 108, 185, 659, 680, 703, 874
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	167, 237, 597
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	218, 336, 492, 512, 696, 762, 799
MspR9I	CCNGG	4 cut(s)	218, 492, 553, 800
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	3 cut(s)	660, 675, 833
MwoI	GCNNNNNNNGC	2 cut(s)	689, 733
NciI	CCSGG	3 cut(s)	218, 492, 800
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	628, 658
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	4 cut(s)	16, 194, 223, 269
NspI	RCATGY	1 cut(s)	628
PdmI	GAANNNNTTC	3 cut(s)	167, 237, 597
PfeI	GAWTC	5 cut(s)	11, 130, 250, 361, 418
Pfl23II	CGTACG	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	2 cut(s)	647, 738
PleI	GAGTC	2 cut(s)	481, 605
PpsI	GAGTC	2 cut(s)	481, 605
Ppu21I	YACGTR	2 cut(s)	228, 427
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	551
PspLI	CGTACG	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	36
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	34, 35, 376
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	5 cut(s)	158, 395, 458, 560, 629
RsaNI	GTAC	5 cut(s)	157, 394, 457, 559, 628
SacI	GAGCTC	1 cut(s)	293
SatI	GCNGC	2 cut(s)	646, 737
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	34, 35, 376
SchI	GAGTC	2 cut(s)	481, 605
ScrFI	CCNGG	4 cut(s)	218, 492, 553, 800
SduI	GDGCHC	4 cut(s)	38, 293, 432, 543
SfaNI	GCATC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	4 cut(s)	308, 371, 765, 874
SsiI	CCGC	5 cut(s)	274, 645, 673, 683, 833
SspMI	CTAG	1 cut(s)	743
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	4 cut(s)	216, 490, 551, 798
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	194, 380, 393
TaiI	ACGT	4 cut(s)	203, 230, 259, 429
TasI	AATT	4 cut(s)	308, 371, 765, 874
TatI	WGTACW	2 cut(s)	393, 456
TauI	GCSGC	1 cut(s)	648
TfiI	GAWTC	5 cut(s)	11, 130, 250, 361, 418
TscAI	CASTG	2 cut(s)	21, 103
TseFI	GTSAC	4 cut(s)	16, 194, 223, 269
TseI	GCWGC	1 cut(s)	736
Tsp45I	GTSAC	4 cut(s)	16, 194, 223, 269
TspDTI	ATGAA	6 cut(s)	12, 64, 246, 431, 457, 838
TspGWI	ACGGA	3 cut(s)	167, 195, 704
TspRI	CASTG	2 cut(s)	21, 103
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	308, 765
XceI	RCATGY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	3 cut(s)	167, 237, 597
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.