Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19514444 .. 19515367

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGGTTTTAAACTTTTAATGGTTTTTCTTTTGTATAGGACGAGGGAATTTGTTCATACGGCTGTGTCACGATTCTTGCTCATTGCATTAGGTGCTGGTGTTGGTTTGGGAGTAAATATATTGATATATCCCATCTGGGCTGGTGTTCCAATCTCGAGTTCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

55

Amino Acids

6.04

Weight (kDa)

10.27

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	7 - 48	1.8e-12	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	154
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	92
CviJI	RGCY	2 cut(s)	62, 140
CviKI_1	RGCY	2 cut(s)	62, 140
DraI	TTTAAA	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	154
FaiI	YATR	4 cut(s)	36, 57, 119, 127
HinfI	GANTC	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	69, 154
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
LpnPI	CCDG	3 cut(s)	81, 121, 126
MaeIII	GTNAC	1 cut(s)	66
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	9, 17
MwoI	GCNNNNNNNGC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	9, 17
SetI	ASST	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	154
SgeI	CNNG	6 cut(s)	54, 81, 88, 108, 148, 153
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	9, 17
Tru9I	TTAA	2 cut(s)	9, 17
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	44
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.