Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19781479 .. 19783099

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGTATTCCGGGGAGTCTTGCTGGGACGGCATGCAAAAGGCGTTGAACTTCGCCGATAATCAGGTGCTTCGTAAATATGGGTTCGTGCACCCGAGCGCAGTGGATCCGTCACTCCAGCCATTGCCGTTTAACTATCCGGTGGTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006080 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010392 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051069 GO:0051070 GO:0061458 GO:0071704 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

49

Amino Acids

5.51

Weight (kDa)

5.41

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	98, 111
AgsI	TTSAA	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	90
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	98, 111
Ama87I	CYCGRG	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	90
BceAI	ACGGC	2 cut(s)	43, 109
BcnI	CCSGG	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	9, 137
BslFI	GGGAC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	98, 111
BsrDI	GCAATG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	1 cut(s)	118
CviKI_1	RGCY	1 cut(s)	118
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	91
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 78, 148
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	98
HapII	CCGG	2 cut(s)	9, 137
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	9, 137
Hpy166II	GTNNAC	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	34, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	7, 22, 47, 128
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	129
MspI	CCGG	2 cut(s)	9, 137
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	34
PaeI	GCATGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	1 cut(s)	66
SphI	GCATGC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.